A2VIS: Amodal-Aware Approach to Video Instance Segmentation

Handling occlusion remains a significant challenge for video instance-level tasks like Multiple Object Tracking (MOT) and Video Instance Segmentation (VIS). In this paper, we propose a novel framework, Amodal-Aware Video Instance Segmentation (A2VIS), which incorporates amodal representations to achieve a reliable and comprehensive understanding of both visible and occluded parts of objects in a video. The key intuition is that awareness of amodal segmentation through spatiotemporal dimension enables a stable stream of object information. In scenarios where objects are partially or completely hidden from view, amodal segmentation offers more consistency and less dramatic changes along the temporal axis compared to visible segmentation. Hence, both amodal and visible information from all clips can be integrated into one global instance prototype. To effectively address the challenge of video amodal segmentation, we introduce the spatiotemporal-prior Amodal Mask Head, which leverages visible information intra clips while extracting amodal characteristics inter clips. Through extensive experiments and ablation studies, we show that A2VIS excels in both MOT and VIS tasks in identifying and tracking object instances with a keen understanding of their full shape.

Amodal Instance Segmentation with Diffusion Shape Prior Estimation

Amodal Instance Segmentation (AIS) presents an intriguing challenge, including the segmentation prediction of both visible and occluded parts of objects within images. Previous methods have often relied on shape prior information gleaned from training data to enhance amodal segmentation. However, these approaches are susceptible to overfitting and disregard object category details. Recent advancements highlight the potential of conditioned diffusion models, pretrained on extensive datasets, to generate images from latent space. Drawing inspiration from this, we propose AISDiff with a Diffusion Shape Prior Estimation (DiffSP) module. AISDiff begins with the prediction of the visible segmentation mask and object category, alongside occlusion-aware processing through the prediction of occluding masks. Subsequently, these elements are inputted into our DiffSP module to infer the shape prior of the object. DiffSP utilizes conditioned diffusion models pretrained on extensive datasets to extract rich visual features for shape prior estimation. Additionally, we introduce the Shape Prior Amodal Predictor, which utilizes attention-based feature maps from the shape prior to refine amodal segmentation. Experiments across various AIS benchmarks demonstrate the effectiveness of our AISDiff.

How DREAMS are made: Emulating Satellite Galaxy and Subhalo Populations with Diffusion Models and Point Clouds

The connection between galaxies and their host dark matter (DM) halos is critical to our understanding of cosmology, galaxy formation, and DM physics. To maximize the return of upcoming cosmological surveys, we need an accurate way to model this complex relationship. Many techniques have been developed to model this connection, from Halo Occupation Distribution (HOD) to empirical and semi-analytic models to hydrodynamic. Hydrodynamic simulations can incorporate more detailed astrophysical processes but are computationally expensive; HODs, on the other hand, are computationally cheap but have limited accuracy. In this work, we present NeHOD, a generative framework based on variational diffusion model and Transformer, for painting galaxies/subhalos on top of DM with an accuracy of hydrodynamic simulations but at a computational cost similar to HOD. By modeling galaxies/subhalos as point clouds, instead of binning or voxelization, we can resolve small spatial scales down to the resolution of the simulations. For each halo, NeHOD predicts the positions, velocities, masses, and concentrations of its central and satellite galaxies. We train NeHOD on the TNG-Warm DM suite of the DREAMS project, which consists of 1024 high-resolution zoom-in hydrodynamic simulations of Milky Way-mass halos with varying warm DM mass and astrophysical parameters. We show that our model captures the complex relationships between subhalo properties as a function of the simulation parameters, including the mass functions, stellar-halo mass relations, concentration-mass relations, and spatial clustering. Our method can be used for a large variety of downstream applications, from galaxy clustering to strong lensing studies.

ShapeFormer: Shape Prior Visible-to-Amodal Transformer-based Amodal Instance Segmentation

Amodal Instance Segmentation (AIS) presents a challenging task as it involves predicting both visible and occluded parts of objects within images. Existing AIS methods rely on a bidirectional approach, encompassing both the transition from amodal features to visible features (amodal-to-visible) and from visible features to amodal features (visible-to-amodal). Our observation shows that the utilization of amodal features through the amodal-to-visible can confuse the visible features due to the extra information of occluded/hidden segments not presented in visible display. Consequently, this compromised quality of visible features during the subsequent visible-to-amodal transition. To tackle this issue, we introduce ShapeFormer, a decoupled Transformer-based model with a visible-to-amodal transition. It facilitates the explicit relationship between output segmentations and avoids the need for amodal-to-visible transitions. ShapeFormer comprises three key modules: (i) Visible-Occluding Mask Head for predicting visible segmentation with occlusion awareness, (ii) Shape-Prior Amodal Mask Head for predicting amodal and occluded masks, and (iii) Category-Specific Shape Prior Retriever aims to provide shape prior knowledge. Comprehensive experiments and extensive ablation studies across various AIS benchmarks demonstrate the effectiveness of our ShapeFormer. The code is available at: https://github.com/UARK-AICV/ShapeFormer

Deep Learning From Crowdsourced Labels: Coupled Cross-entropy Minimization, Identifiability, and Regularization

Using noisy crowdsourced labels from multiple annotators, a deep learning-based end-to-end (E2E) system aims to learn the label correction mechanism and the neural classifier simultaneously. To this end, many E2E systems concatenate the neural classifier with multiple annotator-specific ``label confusion'' layers and co-train the two parts in a parameter-coupled manner. The formulated coupled cross-entropy minimization (CCEM)-type criteria are intuitive and work well in practice. Nonetheless, theoretical understanding of the CCEM criterion has been limited. The contribution of this work is twofold: First, performance guarantees of the CCEM criterion are presented. Our analysis reveals for the first time that the CCEM can indeed correctly identify the annotators' confusion characteristics and the desired ``ground-truth'' neural classifier under realistic conditions, e.g., when only incomplete annotator labeling and finite samples are available. Second, based on the insights learned from our analysis, two regularized variants of the CCEM are proposed. The regularization terms provably enhance the identifiability of the target model parameters in various more challenging cases. A series of synthetic and real data experiments are presented to showcase the effectiveness of our approach.

Deep Clustering with Incomplete Noisy Pairwise Annotations: A Geometric Regularization Approach

The recent integration of deep learning and pairwise similarity annotation-based constrained clustering -- i.e., $\textit{deep constrained clustering}$ (DCC) -- has proven effective for incorporating weak supervision into massive data clustering: Less than 1% of pair similarity annotations can often substantially enhance the clustering accuracy. However, beyond empirical successes, there is a lack of understanding of DCC. In addition, many DCC paradigms are sensitive to annotation noise, but performance-guaranteed noisy DCC methods have been largely elusive. This work first takes a deep look into a recently emerged logistic loss function of DCC, and characterizes its theoretical properties. Our result shows that the logistic DCC loss ensures the identifiability of data membership under reasonable conditions, which may shed light on its effectiveness in practice. Building upon this understanding, a new loss function based on geometric factor analysis is proposed to fend against noisy annotations. It is shown that even under $\textit{unknown}$ annotation confusions, the data membership can still be $\textit{provably}$ identified under our proposed learning criterion. The proposed approach is tested over multiple datasets to validate our claims.

GenQ: Automated Question Generation to Support Caregivers While Reading Stories with Children

When caregivers ask open--ended questions to motivate dialogue with children, it facilitates the child's reading comprehension skills.Although there is scope for use of technological tools, referred here as "intelligent tutoring systems", to scaffold this process, it is currently unclear whether existing intelligent systems that generate human--language like questions is beneficial. Additionally, training data used in the development of these automated question generation systems is typically sourced without attention to demographics, but people with different cultural backgrounds may ask different questions. As a part of a broader project to design an intelligent reading support app for Latinx children, we crowdsourced questions from Latinx caregivers and noncaregivers as well as caregivers and noncaregivers from other demographics. We examine variations in question--asking within this dataset mediated by individual, cultural, and contextual factors. We then design a system that automatically extracts templates from this data to generate open--ended questions that are representative of those asked by Latinx caregivers.

The XPRESS Challenge: Xray Projectomic Reconstruction -- Extracting Segmentation with Skeletons

The wiring and connectivity of neurons form a structural basis for the function of the nervous system. Advances in volume electron microscopy (EM) and image segmentation have enabled mapping of circuit diagrams (connectomics) within local regions of the mouse brain. However, applying volume EM over the whole brain is not currently feasible due to technological challenges. As a result, comprehensive maps of long-range connections between brain regions are lacking. Recently, we demonstrated that X-ray holographic nanotomography (XNH) can provide high-resolution images of brain tissue at a much larger scale than EM. In particular, XNH is wellsuited to resolve large, myelinated axon tracts (white matter) that make up the bulk of long-range connections (projections) and are critical for inter-region communication. Thus, XNH provides an imaging solution for brain-wide projectomics. However, because XNH data is typically collected at lower resolutions and larger fields-of-view than EM, accurate segmentation of XNH images remains an important challenge that we present here. In this task, we provide volumetric XNH images of cortical white matter axons from the mouse brain along with ground truth annotations for axon trajectories. Manual voxel-wise annotation of ground truth is a time-consuming bottleneck for training segmentation networks. On the other hand, skeleton-based ground truth is much faster to annotate, and sufficient to determine connectivity. Therefore, we encourage participants to develop methods to leverage skeleton-based training. To this end, we provide two types of ground-truth annotations: a small volume of voxel-wise annotations and a larger volume with skeleton-based annotations. Entries will be evaluated on how accurately the submitted segmentations agree with the ground-truth skeleton annotations.

EmbryosFormer: Deformable Transformer and Collaborative Encoding-Decoding for Embryos Stage Development Classification

The timing of cell divisions in early embryos during the In-Vitro Fertilization (IVF) process is a key predictor of embryo viability. However, observing cell divisions in Time-Lapse Monitoring (TLM) is a time-consuming process and highly depends on experts. In this paper, we propose EmbryosFormer, a computational model to automatically detect and classify cell divisions from original time-lapse images. Our proposed network is designed as an encoder-decoder deformable transformer with collaborative heads. The transformer contracting path predicts per-image labels and is optimized by a classification head. The transformer expanding path models the temporal coherency between embryo images to ensure monotonic non-decreasing constraint and is optimized by a segmentation head. Both contracting and expanding paths are synergetically learned by a collaboration head. We have benchmarked our proposed EmbryosFormer on two datasets: a public dataset with mouse embryos with 8-cell stage and an in-house dataset with human embryos with 4-cell stage. Source code: https://github.com/UARK-AICV/Embryos.

Uncovering dark matter density profiles in dwarf galaxies with graph neural networks

Dwarf galaxies are small, dark matter-dominated galaxies, some of which are embedded within the Milky Way. Their lack of baryonic matter (e.g., stars and gas) makes them perfect test beds for probing the properties of dark matter -- understanding the spatial dark matter distribution in these systems can be used to constrain microphysical dark matter interactions that influence the formation and evolution of structures in our Universe. We introduce a new method that leverages simulation-based inference and graph-based machine learning in order to infer the dark matter density profiles of dwarf galaxies from observable kinematics of stars gravitationally bound to these systems. Our approach aims to address some of the limitations of established methods based on dynamical Jeans modeling. We show that this novel method can place stronger constraints on dark matter profiles and, consequently, has the potential to weigh in on some of the ongoing puzzles associated with the small-scale structure of dark matter halos, such as the core-cusp discrepancy.