MultiCamCows2024 -- A Multi-view Image Dataset for AI-driven Holstein-Friesian Cattle Re-Identification on a Working Farm

We present MultiCamCows2024, a farm-scale image dataset filmed across multiple cameras for the biometric identification of individual Holstein-Friesian cattle exploiting their unique black and white coat-patterns. Captured by three ceiling-mounted visual sensors covering adjacent barn areas over seven days on a working dairy farm, the dataset comprises 101, 329 images of 90 cows, plus the underlying original CCTV footage. The dataset is provided alongside full computer vision recognition baselines, that is both a supervised and self-supervised learning framework for individual cow identification trained on cattle tracklets. We report a performance above 96% single image identification accuracy from the dataset and demonstrate that combining data from multiple cameras during learning enhances self-supervised identification. We show that our framework enables fully automatic cattle identification, barring only the simple human verification of tracklet integrity during data collection. Crucially, our study highlights that multi-camera, supervised and self-supervised components in tandem not only deliver highly accurate individual cow identification but also achieve this efficiently with no labelling of cattle identities by humans at all. We argue that this improvement in efficacy has practical implications for livestock management, behaviour analysis, and agricultural monitoring. For full reproducibility and practical ease of use, we publish all key software and code including re-identification components and the species detector with this paper.

ChimpVLM: Ethogram-Enhanced Chimpanzee Behaviour Recognition

We show that chimpanzee behaviour understanding from camera traps can be enhanced by providing visual architectures with access to an embedding of text descriptions that detail species behaviours. In particular, we present a vision-language model which employs multi-modal decoding of visual features extracted directly from camera trap videos to process query tokens representing behaviours and output class predictions. Query tokens are initialised using a standardised ethogram of chimpanzee behaviour, rather than using random or name-based initialisations. In addition, the effect of initialising query tokens using a masked language model fine-tuned on a text corpus of known behavioural patterns is explored. We evaluate our system on the PanAf500 and PanAf20K datasets and demonstrate the performance benefits of our multi-modal decoding approach and query initialisation strategy on multi-class and multi-label recognition tasks, respectively. Results and ablations corroborate performance improvements. We achieve state-of-the-art performance over vision and vision-language models in top-1 accuracy (+6.34%) on PanAf500 and overall (+1.1%) and tail-class (+2.26%) mean average precision on PanAf20K. We share complete source code and network weights for full reproducibility of results and easy utilisation.

Universal Bovine Identification via Depth Data and Deep Metric Learning

This paper proposes and evaluates, for the first time, a top-down (dorsal view), depth-only deep learning system for accurately identifying individual cattle and provides associated code, datasets, and training weights for immediate reproducibility. An increase in herd size skews the cow-to-human ratio at the farm and makes the manual monitoring of individuals more challenging. Therefore, real-time cattle identification is essential for the farms and a crucial step towards precision livestock farming. Underpinned by our previous work, this paper introduces a deep-metric learning method for cattle identification using depth data from an off-the-shelf 3D camera. The method relies on CNN and MLP backbones that learn well-generalised embedding spaces from the body shape to differentiate individuals -- requiring neither species-specific coat patterns nor close-up muzzle prints for operation. The network embeddings are clustered using a simple algorithm such as $k$-NN for highly accurate identification, thus eliminating the need to retrain the network for enrolling new individuals. We evaluate two backbone architectures, ResNet, as previously used to identify Holstein Friesians using RGB images, and PointNet, which is specialised to operate on 3D point clouds. We also present CowDepth2023, a new dataset containing 21,490 synchronised colour-depth image pairs of 99 cows, to evaluate the backbones. Both ResNet and PointNet architectures, which consume depth maps and point clouds, respectively, led to high accuracy that is on par with the coat pattern-based backbone.

RBF-PINN: Non-Fourier Positional Embedding in Physics-Informed Neural Networks

While many recent Physics-Informed Neural Networks (PINNs) variants have had considerable success in solving Partial Differential Equations, the empirical benefits of feature mapping drawn from the broader Neural Representations research have been largely overlooked. We highlight the limitations of widely used Fourier-based feature mapping in certain situations and suggest the use of the conditionally positive definite Radial Basis Function. The empirical findings demonstrate the effectiveness of our approach across a variety of forward and inverse problem cases. Our method can be seamlessly integrated into coordinate-based input neural networks and contribute to the wider field of PINNs research.

Training dynamics in Physics-Informed Neural Networks with feature mapping

Physics-Informed Neural Networks (PINNs) have emerged as an iconic machine learning approach for solving Partial Differential Equations (PDEs). Although its variants have achieved significant progress, the empirical success of utilising feature mapping from the wider Implicit Neural Representations studies has been substantially neglected. We investigate the training dynamics of PINNs with a feature mapping layer via the limiting Conjugate Kernel and Neural Tangent Kernel, which sheds light on the convergence and generalisation of the model. We also show the inadequacy of commonly used Fourier-based feature mapping in some scenarios and propose the conditional positive definite Radial Basis Function as a better alternative. The empirical results reveal the efficacy of our method in diverse forward and inverse problem sets. This simple technique can be easily implemented in coordinate input networks and benefits the broad PINNs research.

PanAf20K: A Large Video Dataset for Wild Ape Detection and Behaviour Recognition

We present the PanAf20K dataset, the largest and most diverse open-access annotated video dataset of great apes in their natural environment. It comprises more than 7 million frames across ~20,000 camera trap videos of chimpanzees and gorillas collected at 14 field sites in tropical Africa as part of the Pan African Programme: The Cultured Chimpanzee. The footage is accompanied by a rich set of annotations and benchmarks making it suitable for training and testing a variety of challenging and ecologically important computer vision tasks including ape detection and behaviour recognition. Furthering AI analysis of camera trap information is critical given the International Union for Conservation of Nature now lists all species in the great ape family as either Endangered or Critically Endangered. We hope the dataset can form a solid basis for engagement of the AI community to improve performance, efficiency, and result interpretation in order to support assessments of great ape presence, abundance, distribution, and behaviour and thereby aid conservation efforts.

Diving with Penguins: Detecting Penguins and their Prey in Animal-borne Underwater Videos via Deep Learning

African penguins (Spheniscus demersus) are an endangered species. Little is known regarding their underwater hunting strategies and associated predation success rates, yet this is essential for guiding conservation. Modern bio-logging technology has the potential to provide valuable insights, but manually analysing large amounts of data from animal-borne video recorders (AVRs) is time-consuming. In this paper, we publish an animal-borne underwater video dataset of penguins and introduce a ready-to-deploy deep learning system capable of robustly detecting penguins (mAP50@98.0%) and also instances of fish (mAP50@73.3%). We note that the detectors benefit explicitly from air-bubble learning to improve accuracy. Extending this detector towards a dual-stream behaviour recognition network, we also provide the first results for identifying predation behaviour in penguin underwater videos. Whilst results are promising, further work is required for useful applicability of predation behaviour detection in field scenarios. In summary, we provide a highly reliable underwater penguin detector, a fish detector, and a valuable first attempt towards an automated visual detection of complex behaviours in a marine predator. We publish the networks, the DivingWithPenguins video dataset, annotations, splits, and weights for full reproducibility and immediate usability by practitioners.

Deep Visual-Genetic Biometrics for Taxonomic Classification of Rare Species

Visual as well as genetic biometrics are routinely employed to identify species and individuals in biological applications. However, no attempts have been made in this domain to computationally enhance visual classification of rare classes with little image data via genetics. In this paper, we thus propose aligned visual-genetic inference spaces with the aim to implicitly encode cross-domain associations for improved performance. We demonstrate for the first time that such alignment can be achieved via deep embedding models and that the approach is directly applicable to boosting long-tailed recognition (LTR) particularly for rare species. We experimentally demonstrate the efficacy of the concept via application to microscopic imagery of 30k+ planktic foraminifer shells across 32 species when used together with independent genetic data samples. Most importantly for practitioners, we show that visual-genetic alignment can significantly benefit visual-only recognition of the rarest species. Technically, we pre-train a visual ResNet50 deep learning model using triplet loss formulations to create an initial embedding space. We re-structure this space based on genetic anchors embedded via a Sequence Graph Transform (SGT) and linked to visual data by cross-domain cosine alignment. We show that an LTR approach improves the state-of-the-art across all benchmarks and that adding our visual-genetic alignment improves per-class and particularly rare tail class benchmarks significantly further. We conclude that visual-genetic alignment can be a highly effective tool for complementing visual biological data containing rare classes. The concept proposed may serve as an important future tool for integrating genetics and imageomics towards a more complete scientific representation of taxonomic spaces and life itself. Code, weights, and data splits are published for full reproducibility.

Use Your Head: Improving Long-Tail Video Recognition

This paper presents an investigation into long-tail video recognition. We demonstrate that, unlike naturally-collected video datasets and existing long-tail image benchmarks, current video benchmarks fall short on multiple long-tailed properties. Most critically, they lack few-shot classes in their tails. In response, we propose new video benchmarks that better assess long-tail recognition, by sampling subsets from two datasets: SSv2 and VideoLT. We then propose a method, Long-Tail Mixed Reconstruction, which reduces overfitting to instances from few-shot classes by reconstructing them as weighted combinations of samples from head classes. LMR then employs label mixing to learn robust decision boundaries. It achieves state-of-the-art average class accuracy on EPIC-KITCHENS and the proposed SSv2-LT and VideoLT-LT. Benchmarks and code at: tobyperrett.github.io/lmr

Video-SwinUNet: Spatio-temporal Deep Learning Framework for VFSS Instance Segmentation

This paper presents a deep learning framework for medical video segmentation. Convolution neural network (CNN) and transformer-based methods have achieved great milestones in medical image segmentation tasks due to their incredible semantic feature encoding and global information comprehension abilities. However, most existing approaches ignore a salient aspect of medical video data - the temporal dimension. Our proposed framework explicitly extracts features from neighbouring frames across the temporal dimension and incorporates them with a temporal feature blender, which then tokenises the high-level spatio-temporal feature to form a strong global feature encoded via a Swin Transformer. The final segmentation results are produced via a UNet-like encoder-decoder architecture. Our model outperforms other approaches by a significant margin and improves the segmentation benchmarks on the VFSS2022 dataset, achieving a dice coefficient of 0.8986 and 0.8186 for the two datasets tested. Our studies also show the efficacy of the temporal feature blending scheme and cross-dataset transferability of learned capabilities. Code and models are fully available at https://github.com/SimonZeng7108/Video-SwinUNet.