Abstract:In remote healthcare monitoring, time series representation learning reveals critical patient behavior patterns from high-frequency data. This study analyzes home activity data from individuals living with dementia by proposing a two-stage, self-supervised learning approach tailored to uncover low-rank structures. The first stage converts time-series activities into text sequences encoded by a pre-trained language model, providing a rich, high-dimensional latent state space using a PageRank-based method. This PageRank vector captures latent state transitions, effectively compressing complex behaviour data into a succinct form that enhances interpretability. This low-rank representation not only enhances model interpretability but also facilitates clustering and transition analysis, revealing key behavioral patterns correlated with clinicalmetrics such as MMSE and ADAS-COG scores. Our findings demonstrate the framework's potential in supporting cognitive status prediction, personalized care interventions, and large-scale health monitoring.
Abstract:Timely and accurate assessment of cognitive impairment is a major unmet need in populations at risk. Alterations in speech and language can be early predictors of Alzheimer's disease and related dementias (ADRD) before clinical signs of neurodegeneration. Voice biomarkers offer a scalable and non-invasive solution for automated screening. However, the clinical applicability of machine learning (ML) remains limited by challenges in generalisability, interpretability, and access to patient data to train clinically applicable predictive models. Using DementiaBank recordings (N=291, 64% female), we evaluated ML techniques for ADRD screening and severity prediction from spoken language. We validated model generalisability with pilot data collected in-residence from older adults (N=22, 59% female). Risk stratification and linguistic feature importance analysis enhanced the interpretability and clinical utility of predictions. For ADRD classification, a Random Forest applied to lexical features achieved a mean sensitivity of 69.4% (95% confidence interval (CI) = 66.4-72.5) and specificity of 83.3% (78.0-88.7). On real-world pilot data, this model achieved a mean sensitivity of 70.0% (58.0-82.0) and specificity of 52.5% (39.3-65.7). For severity prediction using Mini-Mental State Examination (MMSE) scores, a Random Forest Regressor achieved a mean absolute MMSE error of 3.7 (3.7-3.8), with comparable performance of 3.3 (3.1-3.5) on pilot data. Linguistic features associated with higher ADRD risk included increased use of pronouns and adverbs, greater disfluency, reduced analytical thinking, lower lexical diversity and fewer words reflecting a psychological state of completion. Our interpretable predictive modelling offers a novel approach for in-home integration with conversational AI to monitor cognitive health and triage higher-risk individuals, enabling earlier detection and intervention.
Abstract:Large language models (LLMs), trained on diverse data effectively acquire a breadth of information across various domains. However, their computational complexity, cost, and lack of transparency hinder their direct application for specialised tasks. In fields such as clinical research, acquiring expert annotations or prior knowledge about predictive models is often costly and time-consuming. This study proposes using LLMs to elicit expert prior distributions for predictive models. This approach also provides an alternative to in-context learning, where language models are tasked with making predictions directly. We compare LLM-elicited and uninformative priors, evaluate whether LLMs truthfully generate parameter distributions, and propose a model selection strategy for in-context learning and prior elicitation. Our findings show that LLM-elicited prior parameter distributions significantly reduce predictive error compared to uninformative priors in low-data settings. Applied to clinical problems, this translates to fewer required biological samples, lowering cost and resources. Prior elicitation also consistently outperforms and proves more reliable than in-context learning at a lower cost, making it a preferred alternative in our setting. We demonstrate the utility of this method across various use cases, including clinical applications. For infection prediction, using LLM-elicited priors reduced the number of required labels to achieve the same accuracy as an uninformative prior by 55%, at 200 days earlier in the study.
Abstract:In Explainable AI, rule extraction translates model knowledge into logical rules, such as IF-THEN statements, crucial for understanding patterns learned by black-box models. This could significantly aid in fields like disease diagnosis, disease progression estimation, or drug discovery. However, such application domains often contain imbalanced data, with the class of interest underrepresented. Existing methods inevitably compromise the performance of rules for the minor class to maximise the overall performance. As the first attempt in this field, we propose a model-agnostic approach for extracting rules from specific subgroups of data, featuring automatic rule generation for numerical features. This method enhances the regional explainability of machine learning models and offers wider applicability compared to existing methods. We additionally introduce a new method for selecting features to compose rules, reducing computational costs in high-dimensional spaces. Experiments across various datasets and models demonstrate the effectiveness of our methods.
Abstract:Time-series representation learning is a key area of research for remote healthcare monitoring applications. In this work, we focus on a dataset of recordings of in-home activity from people living with Dementia. We design a representation learning method based on converting activity to text strings that can be encoded using a language model fine-tuned to transform data from the same participants within a $30$-day window to similar embeddings in the vector space. This allows for clustering and vector searching over participants and days, and the identification of activity deviations to aid with personalised delivery of care.
Abstract:We propose MicroT, a low-energy, multi-task adaptive model framework for resource-constrained MCUs. We divide the original model into a feature extractor and a classifier. The feature extractor is obtained through self-supervised knowledge distillation and further optimized into part and full models through model splitting and joint training. These models are then deployed on MCUs, with classifiers added and trained on local tasks, ultimately performing stage-decision for joint inference. In this process, the part model initially processes the sample, and if the confidence score falls below the set threshold, the full model will resume and continue the inference. We evaluate MicroT on two models, three datasets, and two MCU boards. Our experimental evaluation shows that MicroT effectively improves model performance and reduces energy consumption when dealing with multiple local tasks. Compared to the unoptimized feature extractor, MicroT can improve accuracy by up to 9.87%. On MCUs, compared to the standard full model inference, MicroT can save up to about 29.13% in energy consumption. MicroT also allows users to adaptively adjust the stage-decision ratio as needed, better balancing model performance and energy consumption. Under the standard stage-decision ratio configuration, MicroT can increase accuracy by 5.91% and save about 14.47% of energy consumption.
Abstract:Machine learning enables extracting clinical insights from large temporal datasets. The applications of such machine learning models include identifying disease patterns and predicting patient outcomes. However, limited interpretability poses challenges for deploying advanced machine learning in digital healthcare. Understanding the meaning of latent states is crucial for interpreting machine learning models, assuming they capture underlying patterns. In this paper, we present a concise algorithm that allows for i) interpreting latent states using highly related input features; ii) interpreting predictions using subsets of input features via latent states; and iii) interpreting changes in latent states over time. The proposed algorithm is feasible for any model that is differentiable. We demonstrate that this approach enables the identification of a daytime behavioral pattern for predicting nocturnal behavior in a real-world healthcare dataset.
Abstract:Malnutrition and dehydration are strongly associated with increased cognitive and functional decline in people living with dementia (PLWD), as well as an increased rate of hospitalisations in comparison to their healthy counterparts. Extreme changes in eating and drinking behaviours can often lead to malnutrition and dehydration, accelerating the progression of cognitive and functional decline and resulting in a marked reduction in quality of life. Unfortunately, there are currently no established methods by which to objectively detect such changes. Here, we present the findings of an extensive quantitative analysis conducted on in-home monitoring data collected from 73 households of PLWD using Internet of Things technologies. The Coronavirus 2019 (COVID-19) pandemic has previously been shown to have dramatically altered the behavioural habits, particularly the eating and drinking habits, of PLWD. Using the COVID-19 pandemic as a natural experiment, we conducted linear mixed-effects modelling to examine changes in mean kitchen activity within a subset of 21 households of PLWD that were continuously monitored for 499 days. We report an observable increase in day-time kitchen activity and a significant decrease in night-time kitchen activity (t(147) = -2.90, p < 0.001). We further propose a novel analytical approach to detecting changes in behaviours of PLWD using Markov modelling applied to remote monitoring data as a proxy for behaviours that cannot be directly measured. Together, these results pave the way to introduce improvements into the monitoring of PLWD in naturalistic settings and for shifting from reactive to proactive care.
Abstract:Current methods for pattern analysis in time series mainly rely on statistical features or probabilistic learning and inference methods to identify patterns and trends in the data. Such methods do not generalize well when applied to multivariate, multi-source, state-varying, and noisy time-series data. To address these issues, we propose a highly generalizable method that uses information theory-based features to identify and learn from patterns in multivariate time-series data. To demonstrate the proposed approach, we analyze pattern changes in human activity data. For applications with stochastic state transitions, features are developed based on Shannon's entropy of Markov chains, entropy rates of Markov chains, entropy production of Markov chains, and von Neumann entropy of Markov chains. For applications where state modeling is not applicable, we utilize five entropy variants, including approximate entropy, increment entropy, dispersion entropy, phase entropy, and slope entropy. The results show the proposed information theory-based features improve the recall rate, F1 score, and accuracy on average by up to 23.01\% compared with the baseline models and a simpler model structure, with an average reduction of 18.75 times in the number of model parameters.
Abstract:When data is streaming from multiple sources, conventional training methods update model weights often assuming the same level of reliability for each source; that is: a model does not consider data quality of each source during training. In many applications, sources can have varied levels of noise or corruption that has negative effects on the learning of a robust deep learning model. A key issue is that the quality of data or labels for individual sources is often not available during training and could vary over time. Our solution to this problem is to consider the mistakes made while training on data originating from sources and utilise this to create a perceived data quality for each source. This paper demonstrates a straight-forward and novel technique that can be applied to any gradient descent optimiser: Update model weights as a function of the perceived reliability of data sources within a wider data set. The algorithm controls the plasticity of a given model to weight updates based on the history of losses from individual data sources. We show that applying this technique can significantly improve model performance when trained on a mixture of reliable and unreliable data sources, and maintain performance when models are trained on data sources that are all considered reliable. All code to reproduce this work's experiments and implement the algorithm in the reader's own models is made available.