Abstract:An adverse drug effect (ADE) is any harmful event resulting from medical drug treatment. Despite their importance, ADEs are often under-reported in official channels. Some research has therefore turned to detecting discussions of ADEs in social media. Impressive results have been achieved in various attempts to detect ADEs. In a high-stakes domain such as medicine, however, an in-depth evaluation of a model's abilities is crucial. We address the issue of thorough performance evaluation in English-language ADE detection with hand-crafted templates for four capabilities: Temporal order, negation, sentiment, and beneficial effect. We find that models with similar performance on held-out test sets have varying results on these capabilities.
Abstract:The NLI4CT task at SemEval-2024 emphasizes the development of robust models for Natural Language Inference on Clinical Trial Reports (CTRs) using large language models (LLMs). This edition introduces interventions specifically targeting the numerical, vocabulary, and semantic aspects of CTRs. Our proposed system harnesses the capabilities of the state-of-the-art Mistral model, complemented by an auxiliary model, to focus on the intricate input space of the NLI4CT dataset. Through the incorporation of numerical and acronym-based perturbations to the data, we train a robust system capable of handling both semantic-altering and numerical contradiction interventions. Our analysis on the dataset sheds light on the challenging sections of the CTRs for reasoning.
Abstract:User-generated data sources have gained significance in uncovering Adverse Drug Reactions (ADRs), with an increasing number of discussions occurring in the digital world. However, the existing clinical corpora predominantly revolve around scientific articles in English. This work presents a multilingual corpus of texts concerning ADRs gathered from diverse sources, including patient fora, social media, and clinical reports in German, French, and Japanese. Our corpus contains annotations covering 12 entity types, four attribute types, and 13 relation types. It contributes to the development of real-world multilingual language models for healthcare. We provide statistics to highlight certain challenges associated with the corpus and conduct preliminary experiments resulting in strong baselines for extracting entities and relations between these entities, both within and across languages.
Abstract:In this work, we present the first corpus for German Adverse Drug Reaction (ADR) detection in patient-generated content. The data consists of 4,169 binary annotated documents from a German patient forum, where users talk about health issues and get advice from medical doctors. As is common in social media data in this domain, the class labels of the corpus are very imbalanced. This and a high topic imbalance make it a very challenging dataset, since often, the same symptom can have several causes and is not always related to a medication intake. We aim to encourage further multi-lingual efforts in the domain of ADR detection and provide preliminary experiments for binary classification using different methods of zero- and few-shot learning based on a multi-lingual model. When fine-tuning XLM-RoBERTa first on English patient forum data and then on the new German data, we achieve an F1-score of 37.52 for the positive class. We make the dataset and models publicly available for the community.
Abstract:Distributed word vector spaces are considered hard to interpret which hinders the understanding of natural language processing (NLP) models. In this work, we introduce a new method to interpret arbitrary samples from a word vector space. To this end, we train a neural model to conceptualize word vectors, which means that it activates higher order concepts it recognizes in a given vector. Contrary to prior approaches, our model operates in the original vector space and is capable of learning non-linear relations between word vectors and concepts. Furthermore, we show that it produces considerably less entropic concept activation profiles than the popular cosine similarity.