H$^3$GNNs: Harmonizing Heterophily and Homophily in GNNs via Joint Structural Node Encoding and Self-Supervised Learning

Graph Neural Networks (GNNs) struggle to balance heterophily and homophily in representation learning, a challenge further amplified in self-supervised settings. We propose H$^3$GNNs, an end-to-end self-supervised learning framework that harmonizes both structural properties through two key innovations: (i) Joint Structural Node Encoding. We embed nodes into a unified space combining linear and non-linear feature projections with K-hop structural representations via a Weighted Graph Convolution Network(WGCN). A cross-attention mechanism enhances awareness and adaptability to heterophily and homophily. (ii) Self-Supervised Learning Using Teacher-Student Predictive Architectures with Node-Difficulty Driven Dynamic Masking Strategies. We use a teacher-student model, the student sees the masked input graph and predicts node features inferred by the teacher that sees the full input graph in the joint encoding space. To enhance learning difficulty, we introduce two novel node-predictive-difficulty-based masking strategies. Experiments on seven benchmarks (four heterophily datasets and three homophily datasets) confirm the effectiveness and efficiency of H$^3$GNNs across diverse graph types. Our H$^3$GNNs achieves overall state-of-the-art performance on the four heterophily datasets, while retaining on-par performance to previous state-of-the-art methods on the three homophily datasets.

Haste Makes Waste: A Simple Approach for Scaling Graph Neural Networks

Graph neural networks (GNNs) have demonstrated remarkable success in graph representation learning, and various sampling approaches have been proposed to scale GNNs to applications with large-scale graphs. A class of promising GNN training algorithms take advantage of historical embeddings to reduce the computation and memory cost while maintaining the model expressiveness of GNNs. However, they incur significant computation bias due to the stale feature history. In this paper, we provide a comprehensive analysis of their staleness and inferior performance on large-scale problems. Motivated by our discoveries, we propose a simple yet highly effective training algorithm (REST) to effectively reduce feature staleness, which leads to significantly improved performance and convergence across varying batch sizes. The proposed algorithm seamlessly integrates with existing solutions, boasting easy implementation, while comprehensive experiments underscore its superior performance and efficiency on large-scale benchmarks. Specifically, our improvements to state-of-the-art historical embedding methods result in a 2.7% and 3.6% performance enhancement on the ogbn-papers100M and ogbn-products dataset respectively, accompanied by notably accelerated convergence.

Linear-Time Graph Neural Networks for Scalable Recommendations

In an era of information explosion, recommender systems are vital tools to deliver personalized recommendations for users. The key of recommender systems is to forecast users' future behaviors based on previous user-item interactions. Due to their strong expressive power of capturing high-order connectivities in user-item interaction data, recent years have witnessed a rising interest in leveraging Graph Neural Networks (GNNs) to boost the prediction performance of recommender systems. Nonetheless, classic Matrix Factorization (MF) and Deep Neural Network (DNN) approaches still play an important role in real-world large-scale recommender systems due to their scalability advantages. Despite the existence of GNN-acceleration solutions, it remains an open question whether GNN-based recommender systems can scale as efficiently as classic MF and DNN methods. In this paper, we propose a Linear-Time Graph Neural Network (LTGNN) to scale up GNN-based recommender systems to achieve comparable scalability as classic MF approaches while maintaining GNNs' powerful expressiveness for superior prediction accuracy. Extensive experiments and ablation studies are presented to validate the effectiveness and scalability of the proposed algorithm. Our implementation based on PyTorch is available.

Efficient Large Language Models Fine-Tuning On Graphs

Learning from Text-Attributed Graphs (TAGs) has attracted significant attention due to its wide range of real-world applications. The rapid evolution of large language models (LLMs) has revolutionized the way we process textual data, which indicates a strong potential to replace shallow text embedding generally used in Graph Neural Networks (GNNs). However, we find that existing LLM approaches that exploit text information in graphs suffer from inferior computation and data efficiency. In this work, we introduce a novel and efficient approach for the end-to-end fine-tuning of Large Language Models (LLMs) on TAGs, named LEADING. The proposed approach maintains computation cost and memory overhead comparable to the graph-less fine-tuning of LLMs. Moreover, it transfers the rick knowledge in LLMs to downstream graph learning tasks effectively with limited labeled data in semi-supervised learning. Its superior computation and data efficiency are demonstrated through comprehensive experiments, offering a promising solution for a wide range of LLMs and graph learning tasks on TAGs.

LazyGNN: Large-Scale Graph Neural Networks via Lazy Propagation

Recent works have demonstrated the benefits of capturing long-distance dependency in graphs by deeper graph neural networks (GNNs). But deeper GNNs suffer from the long-lasting scalability challenge due to the neighborhood explosion problem in large-scale graphs. In this work, we propose to capture long-distance dependency in graphs by shallower models instead of deeper models, which leads to a much more efficient model, LazyGNN, for graph representation learning. Moreover, we demonstrate that LazyGNN is compatible with existing scalable approaches (such as sampling methods) for further accelerations through the development of mini-batch LazyGNN. Comprehensive experiments demonstrate its superior prediction performance and scalability on large-scale benchmarks. LazyGNN also achieves state-of-art performance on the OGB leaderboard.