FDA: Feature Decomposition and Aggregation for Robust Airway Segmentation

3D Convolutional Neural Networks (CNNs) have been widely adopted for airway segmentation. The performance of 3D CNNs is greatly influenced by the dataset while the public airway datasets are mainly clean CT scans with coarse annotation, thus difficult to be generalized to noisy CT scans (e.g. COVID-19 CT scans). In this work, we proposed a new dual-stream network to address the variability between the clean domain and noisy domain, which utilizes the clean CT scans and a small amount of labeled noisy CT scans for airway segmentation. We designed two different encoders to extract the transferable clean features and the unique noisy features separately, followed by two independent decoders. Further on, the transferable features are refined by the channel-wise feature recalibration and Signed Distance Map (SDM) regression. The feature recalibration module emphasizes critical features and the SDM pays more attention to the bronchi, which is beneficial to extracting the transferable topological features robust to the coarse labels. Extensive experimental results demonstrated the obvious improvement brought by our proposed method. Compared to other state-of-the-art transfer learning methods, our method accurately segmented more bronchi in the noisy CT scans.

Condition Assessment of Stay Cables through Enhanced Time Series Classification Using a Deep Learning Approach

This study proposes a data-driven method that detects cable damage from measured cable forces by recognizing biased patterns from the intact conditions. The proposed method solves the pattern recognition problem for cable damage detection through time series classification (TSC) in deep learning, considering that the cable's behavior can be implicitly represented by the measured cable force series. A deep learning model, long short term memory fully convolutional network (LSTM-FCN), is leveraged by assigning appropriate inputs and representative class labels for the TSC problem, First, a TSC classifier is trained and validated using the data collected under intact conditions of stay cables, setting the segmented data series as input and the cable (or cable pair) ID as class labels. Subsequently, the classifier is tested using the data collected under possible damaged conditions. Finally, the cable or cable pair corresponding to the least classification accuracy is recommended as the most probable damaged cable or cable pair. The proposed method was tested on an in-service cable-stayed bridge with damaged stay cables. Two scenarios in the proposed TSC scheme were investigated: 1) raw time series of cable forces were fed into the classifiers; and 2) cable force ratios were inputted in the classifiers considering the possible variation of force distribution between cable pairs due to cable damage. Combining the results of TSC testing in these two scenarios, the cable with rupture was correctly identified. This study proposes a data-driven methodology for cable damage detection that requires the least data preprocessing and feature engineering, which enables fast and convenient early detection in real applications.

A Novel DNN Training Framework via Data Sampling and Multi-Task Optimization

Conventional DNN training paradigms typically rely on one training set and one validation set, obtained by partitioning an annotated dataset used for training, namely gross training set, in a certain way. The training set is used for training the model while the validation set is used to estimate the generalization performance of the trained model as the training proceeds to avoid over-fitting. There exist two major issues in this paradigm. Firstly, the validation set may hardly guarantee an unbiased estimate of generalization performance due to potential mismatching with test data. Secondly, training a DNN corresponds to solve a complex optimization problem, which is prone to getting trapped into inferior local optima and thus leads to undesired training results. To address these issues, we propose a novel DNN training framework. It generates multiple pairs of training and validation sets from the gross training set via random splitting, trains a DNN model of a pre-specified structure on each pair while making the useful knowledge (e.g., promising network parameters) obtained from one model training process to be transferred to other model training processes via multi-task optimization, and outputs the best, among all trained models, which has the overall best performance across the validation sets from all pairs. The knowledge transfer mechanism featured in this new framework can not only enhance training effectiveness by helping the model training process to escape from local optima but also improve on generalization performance via implicit regularization imposed on one model training process from other model training processes. We implement the proposed framework, parallelize the implementation on a GPU cluster, and apply it to train several widely used DNN models. Experimental results demonstrate the superiority of the proposed framework over the conventional training paradigm.

PGD-UNet: A Position-Guided Deformable Network for Simultaneous Segmentation of Organs and Tumors

Precise segmentation of organs and tumors plays a crucial role in clinical applications. It is a challenging task due to the irregular shapes and various sizes of organs and tumors as well as the significant class imbalance between the anatomy of interest (AOI) and the background region. In addition, in most situation tumors and normal organs often overlap in medical images, but current approaches fail to delineate both tumors and organs accurately. To tackle such challenges, we propose a position-guided deformable UNet, namely PGD-UNet, which exploits the spatial deformation capabilities of deformable convolution to deal with the geometric transformation of both organs and tumors. Position information is explicitly encoded into the network to enhance the capabilities of deformation. Meanwhile, we introduce a new pooling module to preserve position information lost in conventional max-pooling operation. Besides, due to unclear boundaries between different structures as well as the subjectivity of annotations, labels are not necessarily accurate for medical image segmentation tasks. It may cause the overfitting of the trained network due to label noise. To address this issue, we formulate a novel loss function to suppress the influence of potential label noise on the training process. Our method was evaluated on two challenging segmentation tasks and achieved very promising segmentation accuracy in both tasks.

A comprehensive study of sparse codes on abnormality detection

Sparse representation has been applied successfully in abnormal event detection, in which the baseline is to learn a dictionary accompanied by sparse codes. While much emphasis is put on discriminative dictionary construction, there are no comparative studies of sparse codes regarding abnormality detection. We comprehensively study two types of sparse codes solutions - greedy algorithms and convex L1-norm solutions - and their impact on abnormality detection performance. We also propose our framework of combining sparse codes with different detection methods. Our comparative experiments are carried out from various angles to better understand the applicability of sparse codes, including computation time, reconstruction error, sparsity, detection accuracy, and their performance combining various detection methods. Experiments show that combining OMP codes with maximum coordinate detection could achieve state-of-the-art performance on the UCSD dataset [14].