Emergent kin selection of altruistic feeding via non-episodic neuroevolution

Kin selection theory has proven to be a popular and widely accepted account of how altruistic behaviour can evolve under natural selection. Hamilton's rule, first published in 1964, has since been experimentally validated across a range of different species and social behaviours. In contrast to this large body of work in natural populations, however, there has been relatively little study of kin selection \emph{in silico}. In the current work, we offer what is to our knowledge the first demonstration of kin selection emerging naturally within a population of agents undergoing continuous neuroevolution. Specifically, we find that zero-sum transfer of resources from parents to their infant offspring evolves through kin selection in environments where it is hard for offspring to survive alone. In an additional experiment, we show that kin selection in our simulations relies on a combination of kin recognition and population viscosity. We believe that our work may contribute to the understanding of kin selection in minimal evolutionary systems, without explicit notions of genes and fitness maximisation.

Collective Innovation in Groups of Large Language Models

Human culture relies on collective innovation: our ability to continuously explore how existing elements in our environment can be combined to create new ones. Language is hypothesized to play a key role in human culture, driving individual cognitive capacities and shaping communication. Yet the majority of models of collective innovation assign no cognitive capacities or language abilities to agents. Here, we contribute a computational study of collective innovation where agents are Large Language Models (LLMs) that play Little Alchemy 2, a creative video game originally developed for humans that, as we argue, captures useful aspects of innovation landscapes not present in previous test-beds. We, first, study an LLM in isolation and discover that it exhibits both useful skills and crucial limitations. We, then, study groups of LLMs that share information related to their behaviour and focus on the effect of social connectivity on collective performance. In agreement with previous human and computational studies, we observe that groups with dynamic connectivity out-compete fully-connected groups. Our work reveals opportunities and challenges for future studies of collective innovation that are becoming increasingly relevant as Generative Artificial Intelligence algorithms and humans innovate alongside each other.

When LLMs Play the Telephone Game: Cumulative Changes and Attractors in Iterated Cultural Transmissions

As large language models (LLMs) start interacting with each other and generating an increasing amount of text online, it becomes crucial to better understand how information is transformed as it passes from one LLM to the next. While significant research has examined individual LLM behaviors, existing studies have largely overlooked the collective behaviors and information distortions arising from iterated LLM interactions. Small biases, negligible at the single output level, risk being amplified in iterated interactions, potentially leading the content to evolve towards attractor states. In a series of telephone game experiments, we apply a transmission chain design borrowed from the human cultural evolution literature: LLM agents iteratively receive, produce, and transmit texts from the previous to the next agent in the chain. By tracking the evolution of text toxicity, positivity, difficulty, and length across transmission chains, we uncover the existence of biases and attractors, and study their dependence on the initial text, the instructions, language model, and model size. For instance, we find that more open-ended instructions lead to stronger attraction effects compared to more constrained tasks. We also find that different text properties display different sensitivity to attraction effects, with toxicity leading to stronger attractors than length. These findings highlight the importance of accounting for multi-step transmission dynamics and represent a first step towards a more comprehensive understanding of LLM cultural dynamics.

Cultural evolution in populations of Large Language Models

Research in cultural evolution aims at providing causal explanations for the change of culture over time. Over the past decades, this field has generated an important body of knowledge, using experimental, historical, and computational methods. While computational models have been very successful at generating testable hypotheses about the effects of several factors, such as population structure or transmission biases, some phenomena have so far been more complex to capture using agent-based and formal models. This is in particular the case for the effect of the transformations of social information induced by evolved cognitive mechanisms. We here propose that leveraging the capacity of Large Language Models (LLMs) to mimic human behavior may be fruitful to address this gap. On top of being an useful approximation of human cultural dynamics, multi-agents models featuring generative agents are also important to study for their own sake. Indeed, as artificial agents are bound to participate more and more to the evolution of culture, it is crucial to better understand the dynamics of machine-generated cultural evolution. We here present a framework for simulating cultural evolution in populations of LLMs, allowing the manipulation of variables known to be important in cultural evolution, such as network structure, personality, and the way social information is aggregated and transformed. The software we developed for conducting these simulations is open-source and features an intuitive user-interface, which we hope will help to build bridges between the fields of cultural evolution and generative artificial intelligence.

Discovering Sensorimotor Agency in Cellular Automata using Diversity Search

The research field of Artificial Life studies how life-like phenomena such as autopoiesis, agency, or self-regulation can self-organize in computer simulations. In cellular automata (CA), a key open-question has been whether it it is possible to find environment rules that self-organize robust "individuals" from an initial state with no prior existence of things like "bodies", "brain", "perception" or "action". In this paper, we leverage recent advances in machine learning, combining algorithms for diversity search, curriculum learning and gradient descent, to automate the search of such "individuals", i.e. localized structures that move around with the ability to react in a coherent manner to external obstacles and maintain their integrity, hence primitive forms of sensorimotor agency. We show that this approach enables to find systematically environmental conditions in CA leading to self-organization of such basic forms of agency. Through multiple experiments, we show that the discovered agents have surprisingly robust capabilities to move, maintain their body integrity and navigate among various obstacles. They also show strong generalization abilities, with robustness to changes of scale, random updates or perturbations from the environment not seen during training. We discuss how this approach opens new perspectives in AI and synthetic bioengineering.

Evolving Reservoirs for Meta Reinforcement Learning

Animals often demonstrate a remarkable ability to adapt to their environments during their lifetime. They do so partly due to the evolution of morphological and neural structures. These structures capture features of environments shared between generations to bias and speed up lifetime learning. In this work, we propose a computational model for studying a mechanism that can enable such a process. We adopt a computational framework based on meta reinforcement learning as a model of the interplay between evolution and development. At the evolutionary scale, we evolve reservoirs, a family of recurrent neural networks that differ from conventional networks in that one optimizes not the weight values but hyperparameters of the architecture: the later control macro-level properties, such as memory and dynamics. At the developmental scale, we employ these evolved reservoirs to facilitate the learning of a behavioral policy through Reinforcement Learning (RL). Within an RL agent, a reservoir encodes the environment state before providing it to an action policy. We evaluate our approach on several 2D and 3D simulated environments. Our results show that the evolution of reservoirs can improve the learning of diverse challenging tasks. We study in particular three hypotheses: the use of an architecture combining reservoirs and reinforcement learning could enable (1) solving tasks with partial observability, (2) generating oscillatory dynamics that facilitate the learning of locomotion tasks, and (3) facilitating the generalization of learned behaviors to new tasks unknown during the evolution phase.

Meta-Diversity Search in Complex Systems, A Recipe for Artificial Open-Endedness ?

Can we build an artificial system that would be able to generate endless surprises if ran "forever" in Minecraft? While there is not a single path toward solving that grand challenge, this article presents what we believe to be some working ingredients for the endless generation of novel increasingly complex artifacts in Minecraft. Our framework for an open-ended system includes two components: a complex system used to recursively grow and complexify artifacts over time, and a discovery algorithm that leverages the concept of meta-diversity search. Since complex systems have shown to enable the emergence of considerable complexity from set of simple rules, we believe them to be great candidates to generate all sort of artifacts in Minecraft. Yet, the space of possible artifacts that can be generated by these systems is often unknown, challenging to characterize and explore. Therefore automating the long-term discovery of novel and increasingly complex artifacts in these systems is an exciting research field. To approach these challenges, we formulate the problem of meta-diversity search where an artificial "discovery assistant" incrementally learns a diverse set of representations to characterize behaviors and searches to discover diverse patterns within each of them. A successful discovery assistant should continuously seek for novel sources of diversities while being able to quickly specialize the search toward a new unknown type of diversity. To implement those ideas in the Minecraft environment, we simulate an artificial "chemistry" system based on Lenia continuous cellular automaton for generating artifacts, as well as an artificial "discovery assistant" (called Holmes) for the artifact-discovery process. Holmes incrementally learns a hierarchy of modular representations to characterize divergent sources of diversity and uses a goal-based intrinsically-motivated exploration as the diversity search strategy.

Emergence of Collective Open-Ended Exploration from Decentralized Meta-Reinforcement Learning

Recent works have proven that intricate cooperative behaviors can emerge in agents trained using meta reinforcement learning on open ended task distributions using self-play. While the results are impressive, we argue that self-play and other centralized training techniques do not accurately reflect how general collective exploration strategies emerge in the natural world: through decentralized training and over an open-ended distribution of tasks. In this work we therefore investigate the emergence of collective exploration strategies, where several agents meta-learn independent recurrent policies on an open ended distribution of tasks. To this end we introduce a novel environment with an open ended procedurally generated task space which dynamically combines multiple subtasks sampled from five diverse task types to form a vast distribution of task trees. We show that decentralized agents trained in our environment exhibit strong generalization abilities when confronted with novel objects at test time. Additionally, despite never being forced to cooperate during training the agents learn collective exploration strategies which allow them to solve novel tasks never encountered during training. We further find that the agents learned collective exploration strategies extend to an open ended task setting, allowing them to solve task trees of twice the depth compared to the ones seen during training. Our open source code as well as videos of the agents can be found on our companion website.

SBMLtoODEjax: efficient simulation and optimization of ODE SBML models in JAX

Developing methods to explore, predict and control the dynamic behavior of biological systems, from protein pathways to complex cellular processes, is an essential frontier of research for bioengineering and biomedicine. Thus, significant effort has gone in computational inference and mathematical modeling of biological systems. This effort has resulted in the development of large collections of publicly-available models, typically stored and exchanged on online platforms (such as the BioModels Database) using the Systems Biology Markup Language (SBML), a standard format for representing mathematical models of biological systems. SBMLtoODEjax is a lightweight library that allows to automatically parse and convert SBML models into python models written end-to-end in JAX, a high-performance numerical computing library with automatic differentiation capabilities. SBMLtoODEjax is targeted at researchers that aim to incorporate SBML-specified ordinary differential equation (ODE) models into their python projects and machine learning pipelines, in order to perform efficient numerical simulation and optimization with only a few lines of code. SBMLtoODEjax is available at https://github.com/flowersteam/sbmltoodejax.

Dynamics of niche construction in adaptable populations evolving in diverse environments

In both natural and artificial studies, evolution is often seen as synonymous to natural selection. Individuals evolve under pressures set by environments that are either reset or do not carry over significant changes from previous generations. Thus, niche construction (NC), the reciprocal process to natural selection where individuals incur inheritable changes to their environment, is ignored. Arguably due to this lack of study, the dynamics of NC are today little understood, especially in real-world settings. In this work, we study NC in simulation environments that consist of multiple, diverse niches and populations that evolve their plasticity, evolvability and niche-constructing behaviors. Our empirical analysis reveals many interesting dynamics, with populations experiencing mass extinctions, arms races and oscillations. To understand these behaviors, we analyze the interaction between NC and adaptability and the effect of NC on the population's genomic diversity and dispersal, observing that NC diversifies niches. Our study suggests that complexifying the simulation environments studying NC, by considering multiple and diverse niches, is necessary for understanding its dynamics and can lend testable hypotheses to future studies of both natural and artificial systems.