Abstract:People with Parkinson's Disease (PD) often experience progressively worsening gait, including changes in how they turn around, as the disease progresses. Existing clinical rating tools are not capable of capturing hour-by-hour variations of PD symptoms, as they are confined to brief assessments within clinic settings. Measuring real-world gait turning angles continuously and passively is a component step towards using gait characteristics as sensitive indicators of disease progression in PD. This paper presents a deep learning-based approach to automatically quantify turning angles by extracting 3D skeletons from videos and calculating the rotation of hip and knee joints. We utilise state-of-the-art human pose estimation models, Fastpose and Strided Transformer, on a total of 1386 turning video clips from 24 subjects (12 people with PD and 12 healthy control volunteers), trimmed from a PD dataset of unscripted free-living videos in a home-like setting (Turn-REMAP). We also curate a turning video dataset, Turn-H3.6M, from the public Human3.6M human pose benchmark with 3D ground truth, to further validate our method. Previous gait research has primarily taken place in clinics or laboratories evaluating scripted gait outcomes, but this work focuses on real-world settings where complexities exist, such as baggy clothing and poor lighting. Due to difficulties in obtaining accurate ground truth data in a free-living setting, we quantise the angle into the nearest bin $45^\circ$ based on the manual labelling of expert clinicians. Our method achieves a turning calculation accuracy of 41.6%, a Mean Absolute Error (MAE) of 34.7{\deg}, and a weighted precision WPrec of 68.3% for Turn-REMAP. This is the first work to explore the use of single monocular camera data to quantify turns by PD patients in a home setting.
Abstract:Facial expression recognition (FER) methods have made great inroads in categorising moods and feelings in humans. Beyond FER, pain estimation methods assess levels of intensity in pain expressions, however assessing the quality of all facial expressions is of critical value in health-related applications. In this work, we address the quality of five different facial expressions in patients affected by Parkinson's disease. We propose a novel landmark-guided approach, QAFE-Net, that combines temporal landmark heatmaps with RGB data to capture small facial muscle movements that are encoded and mapped to severity scores. The proposed approach is evaluated on a new Parkinson's Disease Facial Expression dataset (PFED5), as well as on the pain estimation benchmark, the UNBC-McMaster Shoulder Pain Expression Archive Database. Our comparative experiments demonstrate that the proposed method outperforms SOTA action quality assessment works on PFED5 and achieves lower mean absolute error than the SOTA pain estimation methods on UNBC-McMaster. Our code and the new PFED5 dataset are available at https://github.com/shuchaoduan/QAFE-Net.
Abstract:The limited availability of labelled data in Action Quality Assessment (AQA), has forced previous works to fine-tune their models pretrained on large-scale domain-general datasets. This common approach results in weak generalisation, particularly when there is a significant domain shift. We propose a novel, parameter efficient, continual pretraining framework, PECoP, to reduce such domain shift via an additional pretraining stage. In PECoP, we introduce 3D-Adapters, inserted into the pretrained model, to learn spatiotemporal, in-domain information via self-supervised learning where only the adapter modules' parameters are updated. We demonstrate PECoP's ability to enhance the performance of recent state-of-the-art methods (MUSDL, CoRe, and TSA) applied to AQA, leading to considerable improvements on benchmark datasets, JIGSAWS ($\uparrow6.0\%$), MTL-AQA ($\uparrow0.99\%$), and FineDiving ($\uparrow2.54\%$). We also present a new Parkinson's Disease dataset, PD4T, of real patients performing four various actions, where we surpass ($\uparrow3.56\%$) the state-of-the-art in comparison. Our code, pretrained models, and the PD4T dataset are available at https://github.com/Plrbear/PECoP.
Abstract:Parkinson's disease (PD) is a slowly progressive, debilitating neurodegenerative disease which causes motor symptoms including gait dysfunction. Motor fluctuations are alterations between periods with a positive response to levodopa therapy ("on") and periods marked by re-emergency of PD symptoms ("off") as the response to medication wears off. These fluctuations often affect gait speed and they increase in their disabling impact as PD progresses. To improve the effectiveness of current indoor localisation methods, a transformer-based approach utilising dual modalities which provide complementary views of movement, Received Signal Strength Indicator (RSSI) and accelerometer data from wearable devices, is proposed. A sub-objective aims to evaluate whether indoor localisation, including its in-home gait speed features (i.e. the time taken to walk between rooms), could be used to evaluate motor fluctuations by detecting whether the person with PD is taking levodopa medications or withholding them. To properly evaluate our proposed method, we use a free-living dataset where the movements and mobility are greatly varied and unstructured as expected in real-world conditions. 24 participants lived in pairs (consisting of one person with PD, one control) for five days in a smart home with various sensors. Our evaluation on the resulting dataset demonstrates that our proposed network outperforms other methods for indoor localisation. The sub-objective evaluation shows that precise room-level localisation predictions, transformed into in-home gait speed features, produce accurate predictions on whether the PD participant is taking or withholding their medications.
Abstract:Firstly, we present a novel representation for EEG data, a 7-variate series of band power coefficients, which enables the use of (previously inaccessible) time series classification methods. Specifically, we implement the multi-resolution representation-based time series classification method MrSQL. This is deployed on a challenging early-stage Parkinson's dataset that includes wakeful and sleep EEG. Initial results are promising with over 90% accuracy achieved on all EEG data types used. Secondly, we present a framework that enables high-importance data types and brain regions for classification to be identified. Using our framework, we find that, across different EEG data types, it is the Prefrontal brain region that has the most predictive power for the presence of Parkinson's Disease. This outperformance was statistically significant versus ten of the twelve other brain regions (not significant versus adjacent Left Frontal and Right Frontal regions). The Prefrontal region of the brain is important for higher-order cognitive processes and our results align with studies that have shown neural dysfunction in the prefrontal cortex in Parkinson's Disease.
Abstract:Parkinson's disease (PD) is a slowly progressive debilitating neurodegenerative disease which is prominently characterised by motor symptoms. Indoor localisation, including number and speed of room to room transitions, provides a proxy outcome which represents mobility and could be used as a digital biomarker to quantify how mobility changes as this disease progresses. We use data collected from 10 people with Parkinson's, and 10 controls, each of whom lived for five days in a smart home with various sensors. In order to more effectively localise them indoors, we propose a transformer-based approach utilizing two data modalities, Received Signal Strength Indicator (RSSI) and accelerometer data from wearable devices, which provide complementary views of movement. Our approach makes asymmetric and dynamic correlations by a) learning temporal correlations at different scales and levels, and b) utilizing various gating mechanisms to select relevant features within modality and suppress unnecessary modalities. On a dataset with real patients, we demonstrate that our proposed method gives an average accuracy of 89.9%, outperforming competitors. We also show that our model is able to better predict in-home mobility for people with Parkinson's with an average offset of 1.13 seconds to ground truth.
Abstract:Despite the outstanding success of self-supervised pretraining methods for video representation learning, they generalise poorly when the unlabeled dataset for pretraining is small or the domain difference between unlabelled data in source task (pretraining) and labeled data in target task (finetuning) is significant. To mitigate these issues, we propose a novel approach to complement self-supervised pretraining via an auxiliary pretraining phase, based on knowledge similarity distillation, auxSKD, for better generalisation with a significantly smaller amount of video data, e.g. Kinetics-100 rather than Kinetics-400. Our method deploys a teacher network that iteratively distils its knowledge to the student model by capturing the similarity information between segments of unlabelled video data. The student model then solves a pretext task by exploiting this prior knowledge. We also introduce a novel pretext task, Video Segment Pace Prediction or VSPP, which requires our model to predict the playback speed of a randomly selected segment of the input video to provide more reliable self-supervised representations. Our experimental results show superior results to the state of the art on both UCF101 and HMDB51 datasets when pretraining on K100. Additionally, we show that our auxiliary pertaining, auxSKD, when added as an extra pretraining phase to recent state of the art self-supervised methods (e.g. VideoPace and RSPNet), improves their results on UCF101 and HMDB51. Our code will be released soon.
Abstract:Evaluating neurological disorders such as Parkinson's disease (PD) is a challenging task that requires the assessment of several motor and non-motor functions. In this paper, we present an end-to-end deep learning framework to measure PD severity in two important components, hand movement and gait, of the Unified Parkinson's Disease Rating Scale (UPDRS). Our method leverages on an Inflated 3D CNN trained by a temporal segment framework to learn spatial and long temporal structure in video data. We also deploy a temporal attention mechanism to boost the performance of our model. Further, motion boundaries are explored as an extra input modality to assist in obfuscating the effects of camera motion for better movement assessment. We ablate the effects of different data modalities on the accuracy of the proposed network and compare with other popular architectures. We evaluate our proposed method on a dataset of 25 PD patients, obtaining 72.3% and 77.1% top-1 accuracy on hand movement and gait tasks respectively.