Exact Acceleration of Subgraph Graph Neural Networks by Eliminating Computation Redundancy

Graph neural networks (GNNs) have become a prevalent framework for graph tasks. Many recent studies have proposed the use of graph convolution methods over the numerous subgraphs of each graph, a concept known as subgraph graph neural networks (subgraph GNNs), to enhance GNNs' ability to distinguish non-isomorphic graphs. To maximize the expressiveness, subgraph GNNs often require each subgraph to have equal size to the original graph. Despite their impressive performance, subgraph GNNs face challenges due to the vast number and large size of subgraphs which lead to a surge in training data, resulting in both storage and computational inefficiencies. In response to this problem, this paper introduces Ego-Nets-Fit-All (ENFA), a model that uniformly takes the smaller ego nets as subgraphs, thereby providing greater storage and computational efficiency, while at the same time guarantees identical outputs to the original subgraph GNNs even taking the whole graph as subgraphs. The key is to identify and eliminate the redundant computation among subgraphs. For example, a node $v_i$ may appear in multiple subgraphs but is far away from all of their centers (the unsymmetric part between subgraphs). Therefore, its first few rounds of message passing within each subgraph can be computed once in the original graph instead of being computed multiple times within each subgraph. Such strategy enables our ENFA to accelerate subgraph GNNs in an exact way, unlike previous sampling approaches that often lose the performance. Extensive experiments across various datasets reveal that compared with the conventional subgraph GNNs, ENFA can reduce storage space by 29.0% to 84.5% and improve training efficiency by up to 1.66x.

GL-Fusion: Rethinking the Combination of Graph Neural Network and Large Language model

Recent research on integrating Large Language Models (LLMs) with Graph Neural Networks (GNNs) typically follows two approaches: LLM-centered models, which convert graph data into tokens for LLM processing, and GNN-centered models, which use LLMs to encode text features into node and edge representations for GNN input. LLM-centered models often struggle to capture graph structures effectively, while GNN-centered models compress variable-length textual data into fixed-size vectors, limiting their ability to understand complex semantics. Additionally, GNN-centered approaches require converting tasks into a uniform, manually-designed format, restricting them to classification tasks and preventing language output. To address these limitations, we introduce a new architecture that deeply integrates GNN with LLM, featuring three key innovations: (1) Structure-Aware Transformers, which incorporate GNN's message-passing capabilities directly into LLM's transformer layers, allowing simultaneous processing of textual and structural information and generating outputs from both GNN and LLM; (2) Graph-Text Cross-Attention, which processes full, uncompressed text from graph nodes and edges, ensuring complete semantic integration; and (3) GNN-LLM Twin Predictor, enabling LLM's flexible autoregressive generation alongside GNN's scalable one-pass prediction. GL-Fusion achieves outstand performance on various tasks. Notably, it achieves state-of-the-art performance on OGBN-Arxiv and OGBG-Code2.