Simulation of microstructures and machine learning

Machine learning offers attractive solutions to challenging image processing tasks. Tedious development and parametrization of algorithmic solutions can be replaced by training a convolutional neural network or a random forest with a high potential to generalize. However, machine learning methods rely on huge amounts of representative image data along with a ground truth, usually obtained by manual annotation. Thus, limited availability of training data is a critical bottleneck. We discuss two use cases: optical quality control in industrial production and segmenting crack structures in 3D images of concrete. For optical quality control, all defect types have to be trained but are typically not evenly represented in the training data. Additionally, manual annotation is costly and often inconsistent. It is nearly impossible in the second case: segmentation of crack systems in 3D images of concrete. Synthetic images, generated based on realizations of stochastic geometry models, offer an elegant way out. A wide variety of structure types can be generated. The within structure variation is naturally captured by the stochastic nature of the models and the ground truth is for free. Many new questions arise. In particular, which characteristics of the real image data have to be met to which degree of fidelity.

Cracks in concrete

Finding and properly segmenting cracks in images of concrete is a challenging task. Cracks are thin and rough and being air filled do yield a very weak contrast in 3D images obtained by computed tomography. Enhancing and segmenting dark lower-dimensional structures is already demanding. The heterogeneous concrete matrix and the size of the images further increase the complexity. ML methods have proven to solve difficult segmentation problems when trained on enough and well annotated data. However, so far, there is not much 3D image data of cracks available at all, let alone annotated. Interactive annotation is error-prone as humans can easily tell cats from dogs or roads without from roads with cars but have a hard time deciding whether a thin and dark structure seen in a 2D slice continues in the next one. Training networks by synthetic, simulated images is an elegant way out, bears however its own challenges. In this contribution, we describe how to generate semi-synthetic image data to train CNN like the well known 3D U-Net or random forests for segmenting cracks in 3D images of concrete. The thickness of real cracks varies widely, both, within one crack as well as from crack to crack in the same sample. The segmentation method should therefore be invariant with respect to scale changes. We introduce the so-called RieszNet, designed for exactly this purpose. Finally, we discuss how to generalize the ML crack segmentation methods to other concrete types.

Impact of Leakage on Data Harmonization in Machine Learning Pipelines in Class Imbalance Across Sites

Machine learning (ML) models benefit from large datasets. Collecting data in biomedical domains is costly and challenging, hence, combining datasets has become a common practice. However, datasets obtained under different conditions could present undesired site-specific variability. Data harmonization methods aim to remove site-specific variance while retaining biologically relevant information. This study evaluates the effectiveness of popularly used ComBat-based methods for harmonizing data in scenarios where the class balance is not equal across sites. We find that these methods struggle with data leakage issues. To overcome this problem, we propose a novel approach PrettYharmonize, designed to harmonize data by pretending the target labels. We validate our approach using controlled datasets designed to benchmark the utility of harmonization. Finally, using real-world MRI and clinical data, we compare leakage-prone methods with PrettYharmonize and show that it achieves comparable performance while avoiding data leakage, particularly in site-target-dependence scenarios.

Methods for segmenting cracks in 3d images of concrete: A comparison based on semi-synthetic images

Concrete is the standard construction material for buildings, bridges, and roads. As safety plays a central role in the design, monitoring, and maintenance of such constructions, it is important to understand the cracking behavior of concrete. Computed tomography captures the microstructure of building materials and allows to study crack initiation and propagation. Manual segmentation of crack surfaces in large 3d images is not feasible. In this paper, automatic crack segmentation methods for 3d images are reviewed and compared. Classical image processing methods (edge detection filters, template matching, minimal path and region growing algorithms) and learning methods (convolutional neural networks, random forests) are considered and tested on semi-synthetic 3d images. Their performance strongly depends on parameter selection which should be adapted to the grayvalue distribution of the images and the geometric properties of the concrete. In general, the learning methods perform best, in particular for thin cracks and low grayvalue contrast.