A Systematic Literature Review of Spatio-Temporal Graph Neural Network Models for Time Series Forecasting and Classification

In recent years, spatio-temporal graph neural networks (GNNs) have attracted considerable interest in the field of time series analysis, due to their ability to capture dependencies among variables and across time points. The objective of the presented systematic literature review is hence to provide a comprehensive overview of the various modeling approaches and application domains of GNNs for time series classification and forecasting. A database search was conducted, and over 150 journal papers were selected for a detailed examination of the current state-of-the-art in the field. This examination is intended to offer to the reader a comprehensive collection of proposed models, links to related source code, available datasets, benchmark models, and fitting results. All this information is hoped to assist researchers in future studies. To the best of our knowledge, this is the first systematic literature review presenting a detailed comparison of the results of current spatio-temporal GNN models in different domains. In addition, in its final part this review discusses current limitations and challenges in the application of spatio-temporal GNNs, such as comparability, reproducibility, explainability, poor information capacity, and scalability.

A Unified Framework for Neural Computation and Learning Over Time

This paper proposes Hamiltonian Learning, a novel unified framework for learning with neural networks "over time", i.e., from a possibly infinite stream of data, in an online manner, without having access to future information. Existing works focus on the simplified setting in which the stream has a known finite length or is segmented into smaller sequences, leveraging well-established learning strategies from statistical machine learning. In this paper, the problem of learning over time is rethought from scratch, leveraging tools from optimal control theory, which yield a unifying view of the temporal dynamics of neural computations and learning. Hamiltonian Learning is based on differential equations that: (i) can be integrated without the need of external software solvers; (ii) generalize the well-established notion of gradient-based learning in feed-forward and recurrent networks; (iii) open to novel perspectives. The proposed framework is showcased by experimentally proving how it can recover gradient-based learning, comparing it to out-of-the box optimizers, and describing how it is flexible enough to switch from fully-local to partially/non-local computational schemes, possibly distributed over multiple devices, and BackPropagation without storing activations. Hamiltonian Learning is easy to implement and can help researches approach in a principled and innovative manner the problem of learning over time.

Continual Learning of Conjugated Visual Representations through Higher-order Motion Flows

Learning with neural networks from a continuous stream of visual information presents several challenges due to the non-i.i.d. nature of the data. However, it also offers novel opportunities to develop representations that are consistent with the information flow. In this paper we investigate the case of unsupervised continual learning of pixel-wise features subject to multiple motion-induced constraints, therefore named motion-conjugated feature representations. Differently from existing approaches, motion is not a given signal (either ground-truth or estimated by external modules), but is the outcome of a progressive and autonomous learning process, occurring at various levels of the feature hierarchy. Multiple motion flows are estimated with neural networks and characterized by different levels of abstractions, spanning from traditional optical flow to other latent signals originating from higher-level features, hence called higher-order motions. Continuously learning to develop consistent multi-order flows and representations is prone to trivial solutions, which we counteract by introducing a self-supervised contrastive loss, spatially-aware and based on flow-induced similarity. We assess our model on photorealistic synthetic streams and real-world videos, comparing to pre-trained state-of-the art feature extractors (also based on Transformers) and to recent unsupervised learning models, significantly outperforming these alternatives.

Dynamic Decoupling of Placid Terminal Attractor-based Gradient Descent Algorithm

Gradient descent (GD) and stochastic gradient descent (SGD) have been widely used in a large number of application domains. Therefore, understanding the dynamics of GD and improving its convergence speed is still of great importance. This paper carefully analyzes the dynamics of GD based on the terminal attractor at different stages of its gradient flow. On the basis of the terminal sliding mode theory and the terminal attractor theory, four adaptive learning rates are designed. Their performances are investigated in light of a detailed theoretical investigation, and the running times of the learning procedures are evaluated and compared. The total times of their learning processes are also studied in detail. To evaluate their effectiveness, various simulation results are investigated on a function approximation problem and an image classification problem.

Design Proteins Using Large Language Models: Enhancements and Comparative Analyses

Pre-trained LLMs have demonstrated substantial capabilities across a range of conventional natural language processing (NLP) tasks, such as summarization and entity recognition. In this paper, we explore the application of LLMs in the generation of high-quality protein sequences. Specifically, we adopt a suite of pre-trained LLMs, including Mistral-7B1, Llama-2-7B2, Llama-3-8B3, and gemma-7B4, to produce valid protein sequences. All of these models are publicly available.5 Unlike previous work in this field, our approach utilizes a relatively small dataset comprising 42,000 distinct human protein sequences. We retrain these models to process protein-related data, ensuring the generation of biologically feasible protein structures. Our findings demonstrate that even with limited data, the adapted models exhibit efficiency comparable to established protein-focused models such as ProGen varieties, ProtGPT2, and ProLLaMA, which were trained on millions of protein sequences. To validate and quantify the performance of our models, we conduct comparative analyses employing standard metrics such as pLDDT, RMSD, TM-score, and REU. Furthermore, we commit to making the trained versions of all four models publicly available, fostering greater transparency and collaboration in the field of computational biology.

State-Space Modeling in Long Sequence Processing: A Survey on Recurrence in the Transformer Era

Effectively learning from sequential data is a longstanding goal of Artificial Intelligence, especially in the case of long sequences. From the dawn of Machine Learning, several researchers engaged in the search of algorithms and architectures capable of processing sequences of patterns, retaining information about the past inputs while still leveraging the upcoming data, without losing precious long-term dependencies and correlations. While such an ultimate goal is inspired by the human hallmark of continuous real-time processing of sensory information, several solutions simplified the learning paradigm by artificially limiting the processed context or dealing with sequences of limited length, given in advance. These solutions were further emphasized by the large ubiquity of Transformers, that have initially shaded the role of Recurrent Neural Nets. However, recurrent networks are facing a strong recent revival due to the growing popularity of (deep) State-Space models and novel instances of large-context Transformers, which are both based on recurrent computations to go beyond several limits of currently ubiquitous technologies. In fact, the fast development of Large Language Models enhanced the interest in efficient solutions to process data over time. This survey provides an in-depth summary of the latest approaches that are based on recurrent models for sequential data processing. A complete taxonomy over the latest trends in architectural and algorithmic solutions is reported and discussed, guiding researchers in this appealing research field. The emerging picture suggests that there is room for thinking of novel routes, constituted by learning algorithms which depart from the standard Backpropagation Through Time, towards a more realistic scenario where patterns are effectively processed online, leveraging local-forward computations, opening to further research on this topic.

Automating Turkish Educational Quiz Generation Using Large Language Models

Crafting quizzes from educational content is a pivotal activity that benefits both teachers and students by reinforcing learning and evaluating understanding. In this study, we introduce a novel approach to generate quizzes from Turkish educational texts, marking a pioneering endeavor in educational technology specifically tailored to the Turkish educational context. We present a specialized dataset, named the Turkish-Quiz-Instruct, comprising an extensive collection of Turkish educational texts accompanied by multiple-choice and short-answer quizzes. This research leverages the capabilities of Large Language Models (LLMs), including GPT-4-Turbo, GPT-3.5-Turbo, Llama-2-7b-chat-hf, and Llama-2-13b-chat-hf, to automatically generate quiz questions and answers from the Turkish educational content. Our work delineates the methodology for employing these LLMs in the context of Turkish educational material, thereby opening new avenues for automated Turkish quiz generation. The study not only demonstrates the efficacy of using such models for generating coherent and relevant quiz content but also sets a precedent for future research in the domain of automated educational content creation for languages other than English. The Turkish-Quiz-Instruct dataset is introduced as a valuable resource for researchers and practitioners aiming to explore the boundaries of educational technology and language-specific applications of LLMs in Turkish. By addressing the challenges of quiz generation in a non-English context specifically Turkish, this study contributes significantly to the field of Turkish educational technology, providing insights into the potential of leveraging LLMs for educational purposes across diverse linguistic landscapes.

A Turkish Educational Crossword Puzzle Generator

This paper introduces the first Turkish crossword puzzle generator designed to leverage the capabilities of large language models (LLMs) for educational purposes. In this work, we introduced two specially created datasets: one with over 180,000 unique answer-clue pairs for generating relevant clues from the given answer, and another with over 35,000 samples containing text, answer, category, and clue data, aimed at producing clues for specific texts and keywords within certain categories. Beyond entertainment, this generator emerges as an interactive educational tool that enhances memory, vocabulary, and problem-solving skills. It's a notable step in AI-enhanced education, merging game-like engagement with learning for Turkish and setting new standards for interactive, intelligent learning tools in Turkish.

Explainable Malware Detection with Tailored Logic Explained Networks

Malware detection is a constant challenge in cybersecurity due to the rapid development of new attack techniques. Traditional signature-based approaches struggle to keep pace with the sheer volume of malware samples. Machine learning offers a promising solution, but faces issues of generalization to unseen samples and a lack of explanation for the instances identified as malware. However, human-understandable explanations are especially important in security-critical fields, where understanding model decisions is crucial for trust and legal compliance. While deep learning models excel at malware detection, their black-box nature hinders explainability. Conversely, interpretable models often fall short in performance. To bridge this gap in this application domain, we propose the use of Logic Explained Networks (LENs), which are a recently proposed class of interpretable neural networks providing explanations in the form of First-Order Logic (FOL) rules. This paper extends the application of LENs to the complex domain of malware detection, specifically using the large-scale EMBER dataset. In the experimental results we show that LENs achieve robustness that exceeds traditional interpretable methods and that are rivaling black-box models. Moreover, we introduce a tailored version of LENs that is shown to generate logic explanations with higher fidelity with respect to the model's predictions.

Clue-Instruct: Text-Based Clue Generation for Educational Crossword Puzzles

Crossword puzzles are popular linguistic games often used as tools to engage students in learning. Educational crosswords are characterized by less cryptic and more factual clues that distinguish them from traditional crossword puzzles. Despite there exist several publicly available clue-answer pair databases for traditional crosswords, educational clue-answer pairs datasets are missing. In this article, we propose a methodology to build educational clue generation datasets that can be used to instruct Large Language Models (LLMs). By gathering from Wikipedia pages informative content associated with relevant keywords, we use Large Language Models to automatically generate pedagogical clues related to the given input keyword and its context. With such an approach, we created clue-instruct, a dataset containing 44,075 unique examples with text-keyword pairs associated with three distinct crossword clues. We used clue-instruct to instruct different LLMs to generate educational clues from a given input content and keyword. Both human and automatic evaluations confirmed the quality of the generated clues, thus validating the effectiveness of our approach.