System- and Sample-agnostic Isotropic 3D Microscopy by Weakly Physics-informed, Domain-shift-resistant Axial Deblurring

Three-dimensional (3D) subcellular imaging is essential for biomedical research, but the diffraction limit of optical microscopy compromises axial resolution, hindering accurate 3D structural analysis. This challenge is particularly pronounced in label-free imaging of thick, heterogeneous tissues, where assumptions about data distribution (e.g. sparsity, label-specific distribution, and lateral-axial similarity) and system priors (e.g. independent and identically distributed (i.i.d.) noise and linear shift-invariant (LSI) point-spread functions (PSFs)) are often invalid. Here, we introduce SSAI-3D, a weakly physics-informed, domain-shift-resistant framework for robust isotropic 3D imaging. SSAI-3D enables robust axial deblurring by generating a PSF-flexible, noise-resilient, sample-informed training dataset and sparsely fine-tuning a large pre-trained blind deblurring network. SSAI-3D was applied to label-free nonlinear imaging of living organoids, freshly excised human endometrium tissue, and mouse whisker pads, and further validated in publicly available ground-truth-paired experimental datasets of 3D heterogeneous biological tissues with unknown blurring and noise across different microscopy systems.

Learned, Uncertainty-driven Adaptive Acquisition for Photon-Efficient Multiphoton Microscopy

Multiphoton microscopy (MPM) is a powerful imaging tool that has been a critical enabler for live tissue imaging. However, since most multiphoton microscopy platforms rely on point scanning, there is an inherent trade-off between acquisition time, field of view (FOV), phototoxicity, and image quality, often resulting in noisy measurements when fast, large FOV, and/or gentle imaging is needed. Deep learning could be used to denoise multiphoton microscopy measurements, but these algorithms can be prone to hallucination, which can be disastrous for medical and scientific applications. We propose a method to simultaneously denoise and predict pixel-wise uncertainty for multiphoton imaging measurements, improving algorithm trustworthiness and providing statistical guarantees for the deep learning predictions. Furthermore, we propose to leverage this learned, pixel-wise uncertainty to drive an adaptive acquisition technique that rescans only the most uncertain regions of a sample. We demonstrate our method on experimental noisy MPM measurements of human endometrium tissues, showing that we can maintain fine features and outperform other denoising methods while predicting uncertainty at each pixel. Finally, with our adaptive acquisition technique, we demonstrate a 120X reduction in acquisition time and total light dose while successfully recovering fine features in the sample. We are the first to demonstrate distribution-free uncertainty quantification for a denoising task with real experimental data and the first to propose adaptive acquisition based on reconstruction uncertainty

Multi-Sample Training for Neural Image Compression

This paper considers the problem of lossy neural image compression (NIC). Current state-of-the-art (sota) methods adopt uniform posterior to approximate quantization noise, and single-sample pathwise estimator to approximate the gradient of evidence lower bound (ELBO). In this paper, we propose to train NIC with multiple-sample importance weighted autoencoder (IWAE) target, which is tighter than ELBO and converges to log likelihood as sample size increases. First, we identify that the uniform posterior of NIC has special properties, which affect the variance and bias of pathwise and score function estimators of the IWAE target. Moreover, we provide insights on a commonly adopted trick in NIC from gradient variance perspective. Based on those analysis, we further propose multiple-sample NIC (MS-NIC), an enhanced IWAE target for NIC. Experimental results demonstrate that it improves sota NIC methods. Our MS-NIC is plug-and-play, and can be easily extended to other neural compression tasks.

Sensing RISs: Enabling Dimension-Independent CSI Acquisition for Beamforming

Reconfigurable intelligent surfaces (RISs) are envisioned as a potentially transformative technology for future wireless communications. However, RIS's inability to process signals and their attendant increased channel dimension have brought new challenges to RIS-assisted systems, which greatly increases the pilot overhead required for channel estimation. To address these problems, several prior contributions that enhance the hardware architecture of RISs or develop algorithms to exploit the channels' mathematical properties have been made, where the required pilot overhead is reduced to be proportional to the number of RIS elements. In this paper, we propose a dimension-independent channel state information (CSI) acquisition approach in which the required pilot overhead is independent of the number of RIS elements. Specifically, in contrast to traditional signal transmission methods, where signals from the base station (BS) and the users are transmitted in different time slots, we propose a novel method in which signals are transmitted from the BS and the user simultaneously during CSI acquisition. Under this method, an electromagnetic interference random field (IRF) will be induced on the RIS, and we employ a sensing RIS to capture its features. Moreover, we develop three algorithms for parameter estimation in this system, and also derive the Cramer-Rao lower bound (CRLB) and an asymptotic expression for it. Simulation results verify that our proposed signal transmission method and the corresponding algorithms can achieve dimension-independent CSI acquisition for beamforming.

Compact User-Side Reconfigurable Intelligent Surfaces for Uplink Transmission

Large-scale antenna arrays employed by the base station (BS) constitute an essential next-generation communications technique. However, due to the constraints of size, cost, and power consumption, it is usually considered unrealistic to use a large-scale antenna array at the user side. Inspired by the emerging technique of reconfigurable intelligent surfaces (RIS), we firstly propose the concept of user-side RIS (US-RIS) for facilitating the employment of a large-scale antenna array at the user side in a cost- and energy-efficient way. In contrast to the existing employments of RIS, which belong to the family of base-station-side RISs (BSS-RISs), the US-RIS concept by definition facilitates the employment of RIS at the user side for the first time. This is achieved by conceiving a multi-layer structure to realize a compact form-factor. Furthermore, our theoretical results demonstrate that, in contrast to the existing single-layer structure, where only the phase of the signal reflected from RIS can be adjusted, the amplitude of the signal penetrating multi-layer US-RIS can also be partially controlled, which brings about a new degree of freedom (DoF) for beamformer design that can be beneficially exploited for performance enhancement. In addition, based on the proposed multi-layer US-RIS, we formulate the signal-to-noise ratio (SNR) maximization problem of US-RIS-aided communications. Due to the non-convexity of the problem introduced by this multi-layer structure, we propose a multi-layer transmit beamformer design relying on an iterative algorithm for finding the optimal solution by alternately updating each variable. Finally, our simulation results verify the superiority of the proposed multi-layer US-RIS as a compact realization of a large-scale antenna array at the user side for uplink transmission.