Path-RAG: Knowledge-Guided Key Region Retrieval for Open-ended Pathology Visual Question Answering

Accurate diagnosis and prognosis assisted by pathology images are essential for cancer treatment selection and planning. Despite the recent trend of adopting deep-learning approaches for analyzing complex pathology images, they fall short as they often overlook the domain-expert understanding of tissue structure and cell composition. In this work, we focus on a challenging Open-ended Pathology VQA (PathVQA-Open) task and propose a novel framework named Path-RAG, which leverages HistoCartography to retrieve relevant domain knowledge from pathology images and significantly improves performance on PathVQA-Open. Admitting the complexity of pathology image analysis, Path-RAG adopts a human-centered AI approach by retrieving domain knowledge using HistoCartography to select the relevant patches from pathology images. Our experiments suggest that domain guidance can significantly boost the accuracy of LLaVA-Med from 38% to 47%, with a notable gain of 28% for H&E-stained pathology images in the PathVQA-Open dataset. For longer-form question and answer pairs, our model consistently achieves significant improvements of 32.5% in ARCH-Open PubMed and 30.6% in ARCH-Open Books on H\&E images. Our code and dataset is available here (https://github.com/embedded-robotics/path-rag).

Is C4 Dataset Optimal for Pruning? An Investigation of Calibration Data for LLM Pruning

Network pruning has emerged as a potential solution to make LLMs cheaper to deploy. However, existing LLM pruning approaches universally rely on the C4 dataset as the calibration data for calculating pruning scores, leaving its optimality unexplored. In this study, we evaluate the choice of calibration data on LLM pruning, across a wide range of datasets that are most commonly used in LLM training and evaluation, including four pertaining datasets as well as three categories of downstream tasks encompassing nine datasets. Each downstream dataset is prompted with In-Context Learning (ICL) and Chain-of-Thought (CoT), respectively. Besides the already intriguing observation that the choice of calibration data significantly impacts the performance of pruned LLMs, our results also uncover several subtle and often unexpected findings, summarized as follows: (1) C4 is not the optimal choice for LLM pruning, even among commonly used pre-training datasets; (2) arithmetic datasets, when used as calibration data, performs on par or even better than pre-training datasets; (3) pruning with downstream datasets does not necessarily help the corresponding downstream task, compared to pre-training data; (4) ICL is widely beneficial to all data categories, whereas CoT is only useful on certain tasks. Our findings shed light on the importance of carefully selecting calibration data for LLM pruning and pave the way for more efficient deployment of these powerful models in real-world applications. We release our code at: https://github.com/abx393/llm-pruning-calibration-data.

Outline, Then Details: Syntactically Guided Coarse-To-Fine Code Generation

For a complicated algorithm, its implementation by a human programmer usually starts with outlining a rough control flow followed by iterative enrichments, eventually yielding carefully generated syntactic structures and variables in a hierarchy. However, state-of-the-art large language models generate codes in a single pass, without intermediate warm-ups to reflect the structured thought process of "outline-then-detail". Inspired by the recent success of chain-of-thought prompting, we propose ChainCoder, a program synthesis language model that generates Python code progressively, i.e. from coarse to fine in multiple passes. We first decompose source code into layout frame components and accessory components via abstract syntax tree parsing to construct a hierarchical representation. We then reform our prediction target into a multi-pass objective, each pass generates a subsequence, which is concatenated in the hierarchy. Finally, a tailored transformer architecture is leveraged to jointly encode the natural language descriptions and syntactically aligned I/O data samples. Extensive evaluations show that ChainCoder outperforms state-of-the-arts, demonstrating that our progressive generation eases the reasoning procedure and guides the language model to generate higher-quality solutions. Our codes are available at: https://github.com/VITA-Group/ChainCoder.