Abstract:High myopia significantly increases the risk of irreversible vision loss. Traditional perimetry-based visual field (VF) assessment provides systematic quantification of visual loss but it is subjective and time-consuming. Consequently, machine learning models utilizing fundus photographs to estimate VF have emerged as promising alternatives. However, due to the high variability and the limited availability of VF data, existing VF estimation models fail to generalize well, particularly when facing out-of-distribution data across diverse centers and populations. To tackle this challenge, we propose a novel, parameter-efficient framework to enhance the generalized robustness of VF estimation on both in- and out-of-distribution data. Specifically, we design a Refinement-by-Denoising (RED) module for feature refinement and adaptation from pretrained vision models, aiming to learn high-entropy feature representations and to mitigate the domain gap effectively and efficiently. Through independent validation on two distinct real-world datasets from separate centers, our method significantly outperforms existing approaches in RMSE, MAE and correlation coefficient for both internal and external validation. Our proposed framework benefits both in- and out-of-distribution VF estimation, offering significant clinical implications and potential utility in real-world ophthalmic practices.
Abstract:Implicit Neural Representation (INR) has emerged as an effective method for unsupervised image denoising. However, INR models are typically overparameterized; consequently, these models are prone to overfitting during learning, resulting in suboptimal results, even noisy ones. To tackle this problem, we propose a general recipe for regularizing INR models in image denoising. In detail, we propose to iteratively substitute the supervision signal with the mean value derived from both the prediction and supervision signal during the learning process. We theoretically prove that such a simple iterative substitute can gradually enhance the signal-to-noise ratio of the supervision signal, thereby benefiting INR models during the learning process. Our experimental results demonstrate that INR models can be effectively regularized by the proposed approach, relieving overfitting and boosting image denoising performance.
Abstract:Source-free domain adaptation aims to adapt deep neural networks using only pre-trained source models and target data. However, accessing the source model still has a potential concern about leaking the source data, which reveals the patient's privacy. In this paper, we study the challenging but practical problem: black-box source-free domain adaptation where only the outputs of the source model and target data are available. We propose a simple but effective two-stage knowledge distillation method. In Stage \uppercase\expandafter{\romannumeral1}, we train the target model from scratch with soft pseudo-labels generated by the source model in a knowledge distillation manner. In Stage \uppercase\expandafter{\romannumeral2}, we initialize another model as the new student model to avoid the error accumulation caused by noisy pseudo-labels. We feed the images with weak augmentation to the teacher model to guide the learning of the student model. Our method is simple and flexible, and achieves surprising results on three cross-domain segmentation tasks.
Abstract:Deep neural networks (DNNs) achieve promising performance in visual recognition under the independent and identically distributed (IID) hypothesis. In contrast, the IID hypothesis is not universally guaranteed in numerous real-world applications, especially in medical image analysis. Medical image segmentation is typically formulated as a pixel-wise classification task in which each pixel is classified into a category. However, this formulation ignores the hard-to-classified pixels, e.g., some pixels near the boundary area, as they usually confuse DNNs. In this paper, we first explore that hard-to-classified pixels are associated with high uncertainty. Based on this, we propose a novel framework that utilizes uncertainty estimation to highlight hard-to-classified pixels for DNNs, thereby improving its generalization. We evaluate our method on two popular benchmarks: prostate and fundus datasets. The results of the experiment demonstrate that our method outperforms state-of-the-art methods.
Abstract:Test time adaptation (TTA) aims to adapt deep neural networks when receiving out of distribution test domain samples. In this setting, the model can only access online unlabeled test samples and pre-trained models on the training domains. We first address TTA as a feature revision problem due to the domain gap between source domains and target domains. After that, we follow the two measurements alignment and uniformity to discuss the test time feature revision. For test time feature uniformity, we propose a test time self-distillation strategy to guarantee the consistency of uniformity between representations of the current batch and all the previous batches. For test time feature alignment, we propose a memorized spatial local clustering strategy to align the representations among the neighborhood samples for the upcoming batch. To deal with the common noisy label problem, we propound the entropy and consistency filters to select and drop the possible noisy labels. To prove the scalability and efficacy of our method, we conduct experiments on four domain generalization benchmarks and four medical image segmentation tasks with various backbones. Experiment results show that our method not only improves baseline stably but also outperforms existing state-of-the-art test time adaptation methods.
Abstract:Multi-modality medical imaging is crucial in clinical treatment as it can provide complementary information for medical image segmentation. However, collecting multi-modal data in clinical is difficult due to the limitation of the scan time and other clinical situations. As such, it is clinically meaningful to develop an image segmentation paradigm to handle this missing modality problem. In this paper, we propose a prototype knowledge distillation (ProtoKD) method to tackle the challenging problem, especially for the toughest scenario when only single modal data can be accessed. Specifically, our ProtoKD can not only distillate the pixel-wise knowledge of multi-modality data to single-modality data but also transfer intra-class and inter-class feature variations, such that the student model could learn more robust feature representation from the teacher model and inference with only one single modality data. Our method achieves state-of-the-art performance on BraTS benchmark.