Quantifying Nematodes through Images: Datasets, Models, and Baselines of Deep Learning

Every year, plant parasitic nematodes, one of the major groups of plant pathogens, cause a significant loss of crops worldwide. To mitigate crop yield losses caused by nematodes, an efficient nematode monitoring method is essential for plant and crop disease management. In other respects, efficient nematode detection contributes to medical research and drug discovery, as nematodes are model organisms. With the rapid development of computer technology, computer vision techniques provide a feasible solution for quantifying nematodes or nematode infections. In this paper, we survey and categorise the studies and available datasets on nematode detection through deep-learning models. To stimulate progress in related research, this survey presents the potential state-of-the-art object detection models, training techniques, optimisation techniques, and evaluation metrics for deep learning beginners. Moreover, seven state-of-the-art object detection models are validated on three public datasets and the AgriNema dataset for plant parasitic nematodes to construct a baseline for nematode detection.

GPT-4 as Evaluator: Evaluating Large Language Models on Pest Management in Agriculture

In the rapidly evolving field of artificial intelligence (AI), the application of large language models (LLMs) in agriculture, particularly in pest management, remains nascent. We aimed to prove the feasibility by evaluating the content of the pest management advice generated by LLMs, including the Generative Pre-trained Transformer (GPT) series from OpenAI and the FLAN series from Google. Considering the context-specific properties of agricultural advice, automatically measuring or quantifying the quality of text generated by LLMs becomes a significant challenge. We proposed an innovative approach, using GPT-4 as an evaluator, to score the generated content on Coherence, Logical Consistency, Fluency, Relevance, Comprehensibility, and Exhaustiveness. Additionally, we integrated an expert system based on crop threshold data as a baseline to obtain scores for Factual Accuracy on whether pests found in crop fields should take management action. Each model's score was weighted by percentage to obtain a final score. The results showed that GPT-3.4 and GPT-4 outperform the FLAN models in most evaluation categories. Furthermore, the use of instruction-based prompting containing domain-specific knowledge proved the feasibility of LLMs as an effective tool in agriculture, with an accuracy rate of 72%, demonstrating LLMs' effectiveness in providing pest management suggestions.

Spatio-Temporal Similarity Measure based Multi-Task Learning for Predicting Alzheimer's Disease Progression using MRI Data

Identifying and utilising various biomarkers for tracking Alzheimer's disease (AD) progression have received many recent attentions and enable helping clinicians make the prompt decisions. Traditional progression models focus on extracting morphological biomarkers in regions of interest (ROIs) from MRI/PET images, such as regional average cortical thickness and regional volume. They are effective but ignore the relationships between brain ROIs over time, which would lead to synergistic deterioration. For exploring the synergistic deteriorating relationship between these biomarkers, in this paper, we propose a novel spatio-temporal similarity measure based multi-task learning approach for effectively predicting AD progression and sensitively capturing the critical relationships between biomarkers. Specifically, we firstly define a temporal measure for estimating the magnitude and velocity of biomarker change over time, which indicate a changing trend(temporal). Converting this trend into the vector, we then compare this variability between biomarkers in a unified vector space(spatial). The experimental results show that compared with directly ROI based learning, our proposed method is more effective in predicting disease progression. Our method also enables performing longitudinal stability selection to identify the changing relationships between biomarkers, which play a key role in disease progression. We prove that the synergistic deteriorating biomarkers between cortical volumes or surface areas have a significant effect on the cognitive prediction.

Embedding-based Retrieval with LLM for Effective Agriculture Information Extracting from Unstructured Data

Pest identification is a crucial aspect of pest control in agriculture. However, most farmers are not capable of accurately identifying pests in the field, and there is a limited number of structured data sources available for rapid querying. In this work, we explored using domain-agnostic general pre-trained large language model(LLM) to extract structured data from agricultural documents with minimal or no human intervention. We propose a methodology that involves text retrieval and filtering using embedding-based retrieval, followed by LLM question-answering to automatically extract entities and attributes from the documents, and transform them into structured data. In comparison to existing methods, our approach achieves consistently better accuracy in the benchmark while maintaining efficiency.

Closing the Gap between Client and Global Model Performance in Heterogeneous Federated Learning

The heterogeneity of hardware and data is a well-known and studied problem in the community of Federated Learning (FL) as running under heterogeneous settings. Recently, custom-size client models trained with Knowledge Distillation (KD) has emerged as a viable strategy for tackling the heterogeneity challenge. However, previous efforts in this direction are aimed at client model tuning rather than their impact onto the knowledge aggregation of the global model. Despite performance of global models being the primary objective of FL systems, under heterogeneous settings client models have received more attention. Here, we provide more insights into how the chosen approach for training custom client models has an impact on the global model, which is essential for any FL application. We show the global model can fully leverage the strength of KD with heterogeneous data. Driven by empirical observations, we further propose a new approach that combines KD and Learning without Forgetting (LwoF) to produce improved personalised models. We bring heterogeneous FL on pair with the mighty FedAvg of homogeneous FL, in realistic deployment scenarios with dropping clients.

MFL_COVID19: Quantifying Country-based Factors affecting Case Fatality Rate in Early Phase of COVID-19 Epidemic via Regularised Multi-task Feature Learning

Recent outbreak of COVID-19 has led a rapid global spread around the world. Many countries have implemented timely intensive suppression to minimize the infections, but resulted in high case fatality rate (CFR) due to critical demand of health resources. Other country-based factors such as sociocultural issues, ageing population etc., has also influenced practical effectiveness of taking interventions to improve morality in early phase. To better understand the relationship of these factors across different countries with COVID-19 CFR is of primary importance to prepare for potentially second wave of COVID-19 infections. In the paper, we propose a novel regularized multi-task learning based factor analysis approach for quantifying country-based factors affecting CFR in early phase of COVID-19 epidemic. We formulate the prediction of CFR progression as a ML regression problem with observed CFR and other countries-based factors. In this formulation, all CFR related factors were categorized into 6 sectors with 27 indicators. We proposed a hybrid feature selection method combining filter, wrapper and tree-based models to calibrate initial factors for a preliminary feature interaction. Then we adopted two typical single task model (Ridge and Lasso regression) and one state-of-the-art MTFL method (fused sparse group lasso) in our formulation. The fused sparse group Lasso (FSGL) method allows the simultaneous selection of a common set of country-based factors for multiple time points of COVID-19 epidemic and also enables incorporating temporal smoothness of each factor over the whole early phase period. Finally, we proposed one novel temporal voting feature selection scheme to balance the weight instability of multiple factors in our MTFL model.