Contrasting Deep Learning Models for Direct Respiratory Insufficiency Detection Versus Blood Oxygen Saturation Estimation

We contrast high effectiveness of state of the art deep learning architectures designed for general audio classification tasks, refined for respiratory insufficiency (RI) detection and blood oxygen saturation (SpO2) estimation and classification through automated audio analysis. Recently, multiple deep learning architectures have been proposed to detect RI in COVID patients through audio analysis, achieving accuracy above 95% and F1-score above 0.93. RI is a condition associated with low SpO2 levels, commonly defined as the threshold SpO2 <92%. While SpO2 serves as a crucial determinant of RI, a medical doctor's diagnosis typically relies on multiple factors. These include respiratory frequency, heart rate, SpO2 levels, among others. Here we study pretrained audio neural networks (CNN6, CNN10 and CNN14) and the Masked Autoencoder (Audio-MAE) for RI detection, where these models achieve near perfect accuracy, surpassing previous results. Yet, for the regression task of estimating SpO2 levels, the models achieve root mean square error values exceeding the accepted clinical range of 3.5% for finger oximeters. Additionally, Pearson correlation coefficients fail to surpass 0.3. As deep learning models perform better in classification than regression, we transform SpO2-regression into a SpO2-threshold binary classification problem, with a threshold of 92%. However, this task still yields an F1-score below 0.65. Thus, audio analysis offers valuable insights into a patient's RI status, but does not provide accurate information about actual SpO2 levels, indicating a separation of domains in which voice and speech biomarkers may and may not be useful in medical diagnostics under current technologies.

Discriminant audio properties in deep learning based respiratory insufficiency detection in Brazilian Portuguese

This work investigates Artificial Intelligence (AI) systems that detect respiratory insufficiency (RI) by analyzing speech audios, thus treating speech as a RI biomarker. Previous works collected RI data (P1) from COVID-19 patients during the first phase of the pandemic and trained modern AI models, such as CNNs and Transformers, which achieved $96.5\%$ accuracy, showing the feasibility of RI detection via AI. Here, we collect RI patient data (P2) with several causes besides COVID-19, aiming at extending AI-based RI detection. We also collected control data from hospital patients without RI. We show that the considered models, when trained on P1, do not generalize to P2, indicating that COVID-19 RI has features that may not be found in all RI types.

PeLLE: Encoder-based language models for Brazilian Portuguese based on open data

In this paper we present PeLLE, a family of large language models based on the RoBERTa architecture, for Brazilian Portuguese, trained on curated, open data from the Carolina corpus. Aiming at reproducible results, we describe details of the pretraining of the models. We also evaluate PeLLE models against a set of existing multilingual and PT-BR refined pretrained Transformer-based LLM encoders, contrasting performance of large versus smaller-but-curated pretrained models in several downstream tasks. We conclude that several tasks perform better with larger models, but some tasks benefit from smaller-but-curated data in its pretraining.

Acoustic models of Brazilian Portuguese Speech based on Neural Transformers

An acoustic model, trained on a significant amount of unlabeled data, consists of a self-supervised learned speech representation useful for solving downstream tasks, perhaps after a fine-tuning of the model in the respective downstream task. In this work, we build an acoustic model of Brazilian Portuguese Speech through a Transformer neural network. This model was pretrained on more than $800$ hours of Brazilian Portuguese Speech, using a combination of pretraining techniques. Using a labeled dataset collected for the detection of respiratory insufficiency in Brazilian Portuguese speakers, we fine-tune the pretrained Transformer neural network on the following tasks: respiratory insufficiency detection, gender recognition and age group classification. We compare the performance of pretrained Transformers on these tasks with that of Transformers without previous pretraining, noting a significant improvement. In particular, the performance of respiratory insufficiency detection obtains the best reported results so far, indicating this kind of acoustic model as a promising tool for speech-as-biomarker approach. Moreover, the performance of gender recognition is comparable to the state of the art models in English.

Carolina: a General Corpus of Contemporary Brazilian Portuguese with Provenance, Typology and Versioning Information

This paper presents the first publicly available version of the Carolina Corpus and discusses its future directions. Carolina is a large open corpus of Brazilian Portuguese texts under construction using web-as-corpus methodology enhanced with provenance, typology, versioning, and text integrality. The corpus aims at being used both as a reliable source for research in Linguistics and as an important resource for Computer Science research on language models, contributing towards removing Portuguese from the set of low-resource languages. Here we present the construction of the corpus methodology, comparing it with other existing methodologies, as well as the corpus current state: Carolina's first public version has $653,322,577$ tokens, distributed over $7$ broad types. Each text is annotated with several different metadata categories in its header, which we developed using TEI annotation standards. We also present ongoing derivative works and invite NLP researchers to contribute with their own.

Interpretability Analysis of Deep Models for COVID-19 Detection

During the outbreak of COVID-19 pandemic, several research areas joined efforts to mitigate the damages caused by SARS-CoV-2. In this paper we present an interpretability analysis of a convolutional neural network based model for COVID-19 detection in audios. We investigate which features are important for model decision process, investigating spectrograms, F0, F0 standard deviation, sex and age. Following, we analyse model decisions by generating heat maps for the trained models to capture their attention during the decision process. Focusing on a explainable Inteligence Artificial approach, we show that studied models can taken unbiased decisions even in the presence of spurious data in the training set, given the adequate preprocessing steps. Our best model has 94.44% of accuracy in detection, with results indicating that models favors spectrograms for the decision process, particularly, high energy areas in the spectrogram related to prosodic domains, while F0 also leads to efficient COVID-19 detection.

Pretrained audio neural networks for Speech emotion recognition in Portuguese

The goal of speech emotion recognition (SER) is to identify the emotional aspects of speech. The SER challenge for Brazilian Portuguese speech was proposed with short snippets of Portuguese which are classified as neutral, non-neutral female and non-neutral male according to paralinguistic elements (laughing, crying, etc). This dataset contains about $50$ minutes of Brazilian Portuguese speech. As the dataset leans on the small side, we investigate whether a combination of transfer learning and data augmentation techniques can produce positive results. Thus, by combining a data augmentation technique called SpecAugment, with the use of Pretrained Audio Neural Networks (PANNs) for transfer learning we are able to obtain interesting results. The PANNs (CNN6, CNN10 and CNN14) are pretrained on a large dataset called AudioSet containing more than $5000$ hours of audio. They were finetuned on the SER dataset and the best performing model (CNN10) on the validation set was submitted to the challenge, achieving an $F1$ score of $0.73$ up from $0.54$ from the baselines provided by the challenge. Moreover, we also tested the use of Transformer neural architecture, pretrained on about $600$ hours of Brazilian Portuguese audio data. Transformers, as well as more complex models of PANNs (CNN14), fail to generalize to the test set in the SER dataset and do not beat the baseline. Considering the limitation of the dataset sizes, currently the best approach for SER is using PANNs (specifically, CNN6 and CNN10).

Audio MFCC-gram Transformers for respiratory insufficiency detection in COVID-19

This work explores speech as a biomarker and investigates the detection of respiratory insufficiency (RI) by analyzing speech samples. Previous work \cite{spira2021} constructed a dataset of respiratory insufficiency COVID-19 patient utterances and analyzed it by means of a convolutional neural network achieving an accuracy of $87.04\%$, validating the hypothesis that one can detect RI through speech. Here, we study how Transformer neural network architectures can improve the performance on RI detection. This approach enables construction of an acoustic model. By choosing the correct pretraining technique, we generate a self-supervised acoustic model, leading to improved performance ($96.53\%$) of Transformers for RI detection.

Combined Learning of Neural Network Weights for Privacy in Collaborative Tasks

We introduce CoLN, Combined Learning of Neural network weights, a novel method to securely combine Machine Learning models over sensitive data with no sharing of data. With CoLN, local hosts use the same Neural Network architecture and base parameters to train a model using only locally available data. Locally trained models are then submitted to a combining agent, which produces a combined model. The new model's parameters can be sent back to hosts, and can then be used as initial parameters for a new training iteration. CoLN is capable of combining several distributed neural networks of the same kind but is not restricted to any single neural architecture. In this paper we detail the combination algorithm and present experiments with feed-forward, convolutional, and recurrent Neural Network architectures, showing that the CoLN combined model approximates the performance of a hypothetical ideal centralized model, trained using the combination of the local datasets. CoLN can contribute to secure collaborative research, as required in the medical area, where privacy issues preclude data sharing, but where the limitations of local data demand information derived from larger datasets.

verBERT: Automating Brazilian Case Law Document Multi-label Categorization Using BERT

In this work, we carried out a study about the use of attention-based algorithms to automate the categorization of Brazilian case law documents. We used data from the Kollemata Project to produce two distinct datasets with adequate class systems. Then, we implemented a multi-class and multi-label version of BERT and fine-tuned different BERT models with the produced datasets. We evaluated several metrics, adopting the micro-averaged F1-Score as our main metric for which we obtained a performance value of F1-micro=0.72 corresponding to gains of 30 percent points over the tested statistical baseline. In this work, we carried out a study about the use of attention-based algorithms to automate the categorization of Brazilian case law documents. We used data from the \textit{Kollemata} Project to produce two distinct datasets with adequate class systems. Then, we implemented a multi-class and multi-label version of BERT and fine-tuned different BERT models with the produced datasets. We evaluated several metrics, adopting the micro-averaged F1-Score as our main metric for which we obtained a performance value of $\langle \mathcal{F}_1 \rangle_{micro}=0.72$ corresponding to gains of 30 percent points over the tested statistical baseline.