Online Fair Division with Contextual Bandits

This paper considers a novel online fair division problem involving multiple agents in which a learner observes an indivisible item that has to be irrevocably allocated to one of the agents while satisfying a fairness and efficiency constraint. Existing algorithms assume a small number of items with a sufficiently large number of copies, which ensures a good utility estimation for all item-agent pairs. However, such an assumption may not hold in many real-life applications, e.g., an online platform that has a large number of users (items) who only use the platform's service providers (agents) a few times (a few copies of items), which makes it difficult to estimate the utility for all item-agent pairs. To overcome this challenge, we model the online fair division problem using contextual bandits, assuming the utility is an unknown function of the item-agent features. We then propose algorithms for online fair division with sub-linear regret guarantees. Our experimental results also verify the different performance aspects of the proposed algorithms.

Predicting Transcription Factor Binding Sites using Transformer based Capsule Network

Prediction of binding sites for transcription factors is important to understand how they regulate gene expression and how this regulation can be modulated for therapeutic purposes. Although in the past few years there are significant works addressing this issue, there is still space for improvement. In this regard, a transformer based capsule network viz. DNABERT-Cap is proposed in this work to predict transcription factor binding sites mining ChIP-seq datasets. DNABERT-Cap is a bidirectional encoder pre-trained with large number of genomic DNA sequences, empowered with a capsule layer responsible for the final prediction. The proposed model builds a predictor for transcription factor binding sites using the joint optimisation of features encompassing both bidirectional encoder and capsule layer, along with convolutional and bidirectional long-short term memory layers. To evaluate the efficiency of the proposed approach, we use a benchmark ChIP-seq datasets of five cell lines viz. A549, GM12878, Hep-G2, H1-hESC and Hela, available in the ENCODE repository. The results show that the average area under the receiver operating characteristic curve score exceeds 0.91 for all such five cell lines. DNABERT-Cap is also compared with existing state-of-the-art deep learning based predictors viz. DeepARC, DeepTF, CNN-Zeng and DeepBind, and is seen to outperform them.