M3BUNet: Mobile Mean Max UNet for Pancreas Segmentation on CT-Scans

Segmenting organs in CT scan images is a necessary process for multiple downstream medical image analysis tasks. Currently, manual CT scan segmentation by radiologists is prevalent, especially for organs like the pancreas, which requires a high level of domain expertise for reliable segmentation due to factors like small organ size, occlusion, and varying shapes. When resorting to automated pancreas segmentation, these factors translate to limited reliable labeled data to train effective segmentation models. Consequently, the performance of contemporary pancreas segmentation models is still not within acceptable ranges. To improve that, we propose M3BUNet, a fusion of MobileNet and U-Net neural networks, equipped with a novel Mean-Max (MM) attention that operates in two stages to gradually segment pancreas CT images from coarse to fine with mask guidance for object detection. This approach empowers the network to surpass segmentation performance achieved by similar network architectures and achieve results that are on par with complex state-of-the-art methods, all while maintaining a low parameter count. Additionally, we introduce external contour segmentation as a preprocessing step for the coarse stage to assist in the segmentation process through image standardization. For the fine segmentation stage, we found that applying a wavelet decomposition filter to create multi-input images enhances pancreas segmentation performance. We extensively evaluate our approach on the widely known NIH pancreas dataset and MSD pancreas dataset. Our approach demonstrates a considerable performance improvement, achieving an average Dice Similarity Coefficient (DSC) value of up to 89.53% and an Intersection Over Union (IOU) score of up to 81.16 for the NIH pancreas dataset, and 88.60% DSC and 79.90% IOU for the MSD Pancreas dataset.

COVID-19 Detection System: A Comparative Analysis of System Performance Based on Acoustic Features of Cough Audio Signals

A wide range of respiratory diseases, such as cold and flu, asthma, and COVID-19, affect people's daily lives worldwide. In medical practice, respiratory sounds are widely used in medical services to diagnose various respiratory illnesses and lung disorders. The traditional diagnosis of such sounds requires specialized knowledge, which can be costly and reliant on human expertise. Recently, cough audio recordings have been used to automate the process of detecting respiratory conditions. This research aims to examine various acoustic features that enhance the performance of machine learning (ML) models in detecting COVID-19 from cough signals. This study investigates the efficacy of three feature extraction techniques, including Mel Frequency Cepstral Coefficients (MFCC), Chroma, and Spectral Contrast features, on two ML algorithms, Support Vector Machine (SVM) and Multilayer Perceptron (MLP), and thus proposes an efficient COVID-19 detection system. The proposed system produces a practical solution and demonstrates higher state-of-the-art classification performance on COUGHVID and Virufy datasets for COVID-19 detection.

Classification of sleep stages from EEG, EOG and EMG signals by SSNet

Classification of sleep stages plays an essential role in diagnosing sleep-related diseases including Sleep Disorder Breathing (SDB) disease. In this study, we propose an end-to-end deep learning architecture, named SSNet, which comprises of two deep learning networks based on Convolutional Neuron Networks (CNN) and Long Short Term Memory (LSTM). Both deep learning networks extract features from the combination of Electrooculogram (EOG), Electroencephalogram (EEG), and Electromyogram (EMG) signals, as each signal has distinct features that help in the classification of sleep stages. The features produced by the two-deep learning networks are concatenated to pass to the fully connected layer for the classification. The performance of our proposed model is evaluated by using two public datasets Sleep-EDF Expanded dataset and ISRUC-Sleep dataset. The accuracy and Kappa coefficient are 96.36% and 93.40% respectively, for classifying three classes of sleep stages using Sleep-EDF Expanded dataset. Whereas, the accuracy and Kappa coefficient are 96.57% and 83.05% respectively for five classes of sleep stages using Sleep-EDF Expanded dataset. Our model achieves the best performance in classifying sleep stages when compared with the state-of-the-art techniques.

Patient Independent Interictal Epileptiform Discharge Detection

Epilepsy is a highly prevalent brain condition with many serious complications arising from it. The majority of patients which present to a clinic and undergo electroencephalogram (EEG) monitoring would be unlikely to experience seizures during the examination period, thus the presence of interictal epileptiform discharges (IEDs) become effective markers for the diagnosis of epilepsy. Furthermore, IED shapes and patterns are highly variable across individuals, yet trained experts are still able to identify them through EEG recordings - meaning that commonalities exist across IEDs that an algorithm can be trained on to detect and generalise to the larger population. This research proposes an IED detection system for the binary classification of epilepsy using scalp EEG recordings. The proposed system features an ensemble based deep learning method to boost the performance of a residual convolutional neural network, and a bidirectional long short-term memory network. This is implemented using raw EEG data, sourced from Temple University Hospital's EEG Epilepsy Corpus, and is found to outperform the current state of the art model for IED detection across the same dataset. The achieved accuracy and Area Under Curve (AUC) of 94.92% and 97.45% demonstrates the effectiveness of an ensemble method, and that IED detection can be achieved with high performance using raw scalp EEG data, thus showing promise for the proposed approach in clinical settings.

MP-SeizNet: A Multi-Path CNN Bi-LSTM Network for Seizure-Type Classification Using EEG

Seizure type identification is essential for the treatment and management of epileptic patients. However, it is a difficult process known to be time consuming and labor intensive. Automated diagnosis systems, with the advancement of machine learning algorithms, have the potential to accelerate the classification process, alert patients, and support physicians in making quick and accurate decisions. In this paper, we present a novel multi-path seizure-type classification deep learning network (MP-SeizNet), consisting of a convolutional neural network (CNN) and a bidirectional long short-term memory neural network (Bi-LSTM) with an attention mechanism. The objective of this study was to classify specific types of seizures, including complex partial, simple partial, absence, tonic, and tonic-clonic seizures, using only electroencephalogram (EEG) data. The EEG data is fed to our proposed model in two different representations. The CNN was fed with wavelet-based features extracted from the EEG signals, while the Bi-LSTM was fed with raw EEG signals to let our MP-SeizNet jointly learns from different representations of seizure data for more accurate information learning. The proposed MP-SeizNet was evaluated using the largest available EEG epilepsy database, the Temple University Hospital EEG Seizure Corpus, TUSZ v1.5.2. We evaluated our proposed model across different patient data using three-fold cross-validation and across seizure data using five-fold cross-validation, achieving F1 scores of 87.6% and 98.1%, respectively.

Evaluating BERT-based Pre-training Language Models for Detecting Misinformation

It is challenging to control the quality of online information due to the lack of supervision over all the information posted online. Manual checking is almost impossible given the vast number of posts made on online media and how quickly they spread. Therefore, there is a need for automated rumour detection techniques to limit the adverse effects of spreading misinformation. Previous studies mainly focused on finding and extracting the significant features of text data. However, extracting features is time-consuming and not a highly effective process. This study proposes the BERT- based pre-trained language models to encode text data into vectors and utilise neural network models to classify these vectors to detect misinformation. Furthermore, different language models (LM) ' performance with different trainable parameters was compared. The proposed technique is tested on different short and long text datasets. The result of the proposed technique has been compared with the state-of-the-art techniques on the same datasets. The results show that the proposed technique performs better than the state-of-the-art techniques. We also tested the proposed technique by combining the datasets. The results demonstrated that the large data training and testing size considerably improves the technique's performance.

Wavelet-Based Multi-Class Seizure Type Classification System

Epilepsy is one of the most common brain diseases that affect more than 1\% of the world's population. It is characterized by recurrent seizures, which come in different types and are treated differently. Electroencephalography (EEG) is commonly used in medical services to diagnose seizures and their types. The accurate identification of seizures helps to provide optimal treatment and accurate information to the patient. However, the manual diagnostic procedures of epileptic seizures are laborious and highly-specialized. Moreover, EEG manual evaluation is a process known to have a low inter-rater agreement among experts. This paper presents a novel automatic technique that involves extraction of specific features from EEG signals using Dual-tree Complex Wavelet Transform (DTCWT) and classifying them. We evaluated the proposed technique on TUH EEG Seizure Corpus (TUSZ) ver.1.5.2 dataset and compared the performance with existing state-of-the-art techniques using overall F1-score due to class imbalance seizure types. Our proposed technique achieved the best results of weighted F1-score of 99.1\% and 74.7\% for seizure-wise and patient-wise classification respectively, thereby setting new benchmark results for this dataset.

BERT based classification system for detecting rumours on Twitter

The role of social media in opinion formation has far-reaching implications in all spheres of society. Though social media provide platforms for expressing news and views, it is hard to control the quality of posts due to the sheer volumes of posts on platforms like Twitter and Facebook. Misinformation and rumours have lasting effects on society, as they tend to influence people's opinions and also may motivate people to act irrationally. It is therefore very important to detect and remove rumours from these platforms. The only way to prevent the spread of rumours is through automatic detection and classification of social media posts. Our focus in this paper is the Twitter social medium, as it is relatively easy to collect data from Twitter. The majority of previous studies used supervised learning approaches to classify rumours on Twitter. These approaches rely on feature extraction to obtain both content and context features from the text of tweets to distinguish rumours and non-rumours. Manually extracting features however is time-consuming considering the volume of tweets. We propose a novel approach to deal with this problem by utilising sentence embedding using BERT to identify rumours on Twitter, rather than the usual feature extraction techniques. We use sentence embedding using BERT to represent each tweet's sentences into a vector according to the contextual meaning of the tweet. We classify those vectors into rumours or non-rumours by using various supervised learning techniques. Our BERT based models improved the accuracy by approximately 10% as compared to previous methods.

Estimating galaxy masses from kinematics of globular cluster systems: a new method based on deep learning

We present a new method by which the total masses of galaxies including dark matter can be estimated from the kinematics of their globular cluster systems (GCSs). In the proposed method, we apply the convolutional neural networks (CNNs) to the two-dimensional (2D) maps of line-of-sight-velocities ($V$) and velocity dispersions ($\sigma$) of GCSs predicted from numerical simulations of disk and elliptical galaxies. In this method, we first train the CNN using either only a larger number ($\sim 200,000$) of the synthesized 2D maps of $\sigma$ ("one-channel") or those of both $\sigma$ and $V$ ("two-channel"). Then we use the CNN to predict the total masses of galaxies (i.e., test the CNN) for the totally unknown dataset that is not used in training the CNN. The principal results show that overall accuracy for one-channel and two-channel data is 97.6\% and 97.8\% respectively, which suggests that the new method is promising. The mean absolute errors (MAEs) for one-channel and two-channel data are 0.288 and 0.275 respectively, and the value of root mean square errors (RMSEs) are 0.539 and 0.51 for one-channel and two-channel respectively. These smaller MAEs and RMSEs for two-channel data (i.e., better performance) suggest that the new method can properly consider the global rotation of GCSs in the mass estimation. We stress that the prediction accuracy in the new mass estimation method not only depends on the architectures of CNNs but also can be affected by the introduction of noise in the synthesized images.

Automatic detection of abnormal EEG signals using wavelet feature extraction and gradient boosting decision tree

Electroencephalography is frequently used for diagnostic evaluation of various brain-related disorders due to its excellent resolution, non-invasive nature and low cost. However, manual analysis of EEG signals could be strenuous and a time-consuming process for experts. It requires long training time for physicians to develop expertise in it and additionally experts have low inter-rater agreement (IRA) among themselves. Therefore, many Computer Aided Diagnostic (CAD) based studies have considered the automation of interpreting EEG signals to alleviate the workload and support the final diagnosis. In this paper, we present an automatic binary classification framework for brain signals in multichannel EEG recordings. We propose to use Wavelet Packet Decomposition (WPD) techniques to decompose the EEG signals into frequency sub-bands and extract a set of statistical features from each of the selected coefficients. Moreover, we propose a novel method to reduce the dimension of the feature space without compromising the quality of the extracted features. The extracted features are classified using different Gradient Boosting Decision Tree (GBDT) based classification frameworks, which are CatBoost, XGBoost and LightGBM. We used Temple University Hospital EEG Abnormal Corpus V2.0.0 to test our proposed technique. We found that CatBoost classifier achieves the binary classification accuracy of 87.68%, and outperforms state-of-the-art techniques on the same dataset by more than 1% in accuracy and more than 3% in sensitivity. The obtained results in this research provide important insights into the usefulness of WPD feature extraction and GBDT classifiers for EEG classification.