Multi-modal Large Language models (MLLMs) are always trained on data from diverse and unreliable sources, which may contain misaligned or mislabeled text-image pairs. This frequently causes robustness issues and hallucinations, leading to performance degradation. Data valuation is an efficient way to detect and trace these misalignments. Nevertheless, existing methods are computationally expensive for MLLMs. While computationally efficient, the classical influence functions are inadequate for contrastive learning models because they were originally designed for pointwise loss. Additionally, contrastive learning involves minimizing the distance between the modalities of positive samples and maximizing the distance between the modalities of negative samples. This requires us to evaluate the influence of samples from both perspectives. To tackle these challenges, we introduce the Extended Influence Function for Contrastive Loss (ECIF), an influence function crafted for contrastive loss. ECIF considers both positive and negative samples and provides a closed-form approximation of contrastive learning models, eliminating the need for retraining. Building upon ECIF, we develop a series of algorithms for data evaluation in MLLM, misalignment detection, and misprediction trace-back tasks. Experimental results demonstrate our ECIF advances the transparency and interpretability of MLLMs by offering a more accurate assessment of data impact and model alignment compared to traditional baseline methods.