Deformation-Aware Segmentation Network Robust to Motion Artifacts for Brain Tissue Segmentation using Disentanglement Learning

Motion artifacts caused by prolonged acquisition time are a significant challenge in Magnetic Resonance Imaging (MRI), hindering accurate tissue segmentation. These artifacts appear as blurred images that mimic tissue-like appearances, making segmentation difficult. This study proposes a novel deep learning framework that demonstrates superior performance in both motion correction and robust brain tissue segmentation in the presence of artifacts. The core concept lies in a complementary process: a disentanglement learning network progressively removes artifacts, leading to cleaner images and consequently, more accurate segmentation by a jointly trained motion estimation and segmentation network. This network generates three outputs: a motioncorrected image, a motion deformation map that identifies artifact-affected regions, and a brain tissue segmentation mask. This deformation serves as a guidance mechanism for the disentanglement process, aiding the model in recovering lost information or removing artificial structures introduced by the artifacts. Extensive in-vivo experiments on pediatric motion data demonstrate that our proposed framework outperforms state-of-the-art methods in segmenting motion-corrupted MRI scans.

Deep Learning Can Reverse Photon Migration for Diffuse Optical Tomography

Can artificial intelligence (AI) learn complicated non-linear physics? Here we propose a novel deep learning approach that learns non-linear photon scattering physics and obtains accurate 3D distribution of optical anomalies. In contrast to the traditional black-box deep learning approaches to inverse problems, our deep network learns to invert the Lippmann-Schwinger integral equation which describes the essential physics of photon migration of diffuse near-infrared (NIR) photons in turbid media. As an example for clinical relevance, we applied the method to our prototype diffuse optical tomography (DOT). We show that our deep neural network, trained with only simulation data, can accurately recover the location of anomalies within biomimetic phantoms and live animals without the use of an exogenous contrast agent.