Abstract:This research introduces an innovative method for the early screening of cardiorespiratory diseases based on an acquisition protocol, which leverages commodity smartphone's Inertial Measurement Units (IMUs) and deep learning techniques. We collected, in a clinical setting, a dataset featuring recordings of breathing kinematics obtained by accelerometer and gyroscope readings from five distinct body regions. We propose an end-to-end deep learning pipeline for early cardiorespiratory disease screening, incorporating a preprocessing step segmenting the data into individual breathing cycles, and a recurrent bidirectional module capturing features from diverse body regions. We employed Leave-one-out-cross-validation with Bayesian optimization for hyperparameter tuning and model selection. The experimental results consistently demonstrated the superior performance of a bidirectional Long-Short Term Memory (Bi-LSTM) as a feature encoder architecture, yielding an average sensitivity of $0.81 \pm 0.02$, specificity of $0.82 \pm 0.05$, F1 score of $0.81 \pm 0.02$, and accuracy of $80.2\% \pm 3.9$ across diverse seed variations. We also assessed generalization capabilities on a skewed distribution, comprising exclusively healthy patients not used in training, revealing a true negative rate of $74.8 \% \pm 4.5$. The sustained accuracy of predictions over time during breathing cycles within a single patient underscores the efficacy of the preprocessing strategy, highlighting the model's ability to discern significant patterns throughout distinct phases of the respiratory cycle. This investigation underscores the potential usefulness of widely available smartphones as devices for timely cardiorespiratory disease screening in the general population, in at-home settings, offering crucial assistance to public health efforts (especially during a pandemic outbreaks, such as the recent COVID-19).
Abstract:Time-resolved three-dimensional flow MRI (4D flow MRI) provides a unique non-invasive solution to visualize and quantify hemodynamics in blood vessels such as the aortic arch. However, most current analysis methods for arterial 4D flow MRI use static artery walls because of the difficulty in obtaining a full cycle segmentation. To overcome this limitation, we propose a neural fields-based method that directly estimates continuous periodic wall deformations throughout the cardiac cycle. For a 3D + time imaging dataset, we optimize an implicit neural representation (INR) that represents a time-dependent velocity vector field (VVF). An ODE solver is used to integrate the VVF into a deformation vector field (DVF), that can deform images, segmentation masks, or meshes over time, thereby visualizing and quantifying local wall motion patterns. To properly reflect the periodic nature of 3D + time cardiovascular data, we impose periodicity in two ways. First, by periodically encoding the time input to the INR, and hence VVF. Second, by regularizing the DVF. We demonstrate the effectiveness of this approach on synthetic data with different periodic patterns, ECG-gated CT, and 4D flow MRI data. The obtained method could be used to improve 4D flow MRI analysis.