Abstract:Change point detection (CPD) and anomaly detection (AD) are essential techniques in various fields to identify abrupt changes or abnormal data instances. However, existing methods are often constrained to univariate data, face scalability challenges with large datasets due to computational demands, and experience reduced performance with high-dimensional or intricate data, as well as hidden anomalies. Furthermore, they often lack interpretability and adaptability to domain-specific knowledge, which limits their versatility across different fields. In this work, we propose a deep learning-based CPD/AD method called Probabilistic Predictive Coding (PPC) that jointly learns to encode sequential data to low dimensional latent space representations and to predict the subsequent data representations as well as the corresponding prediction uncertainties. The model parameters are optimized with maximum likelihood estimation by comparing these predictions with the true encodings. At the time of application, the true and predicted encodings are used to determine the probability of conformity, an interpretable and meaningful anomaly score. Furthermore, our approach has linear time complexity, scalability issues are prevented, and the method can easily be adjusted to a wide range of data types and intricate applications. We demonstrate the effectiveness and adaptability of our proposed method across synthetic time series experiments, image data, and real-world magnetic resonance spectroscopic imaging data.
Abstract:Electrocardiographic signals (ECG) are used in many healthcare applications, including at-home monitoring of vital signs. These applications often rely on wearable technology and provide low quality ECG signals. Although many methods have been proposed for denoising the ECG to boost its quality and enable clinical interpretation, these methods typically fall short for ECG data obtained with wearable technology, because of either their limited tolerance to noise or their limited flexibility to capture ECG dynamics. This paper presents HKF, a hierarchical Kalman filtering method, that leverages a patient-specific learned structured prior of the ECG signal, and integrates it into a state space model to yield filters that capture both intra- and inter-heartbeat dynamics. HKF is demonstrated to outperform previously proposed methods such as the model-based Kalman filter and data-driven autoencoders, in ECG denoising task in terms of mean-squared error, making it a suitable candidate for application in extramural healthcare settings.