V-FAT: Benchmarking Visual Fidelity Against Text-bias

Recent advancements in Multimodal Large Language Models (MLLMs) have demonstrated impressive performance on standard visual reasoning benchmarks. However, there is growing concern that these models rely excessively on linguistic shortcuts rather than genuine visual grounding, a phenomenon we term Text Bias. In this paper, we investigate the fundamental tension between visual perception and linguistic priors. We decouple the sources of this bias into two dimensions: Internal Corpus Bias, stemming from statistical correlations in pretraining, and External Instruction Bias, arising from the alignment-induced tendency toward sycophancy. To quantify this effect, we introduce V-FAT (Visual Fidelity Against Text-bias), a diagnostic benchmark comprising 4,026 VQA instances across six semantic domains. V-FAT employs a Three-Level Evaluation Framework that systematically increases the conflict between visual evidence and textual information: (L1) internal bias from atypical images, (L2) external bias from misleading instructions, and (L3) synergistic bias where both coincide. We introduce the Visual Robustness Score (VRS), a metric designed to penalize "lucky" linguistic guesses and reward true visual fidelity. Our evaluation of 12 frontier MLLMs reveals that while models excel in existing benchmarks, they experience significant visual collapse under high linguistic dominance.

Cross-Attention Graph Neural Networks for Inferring Gene Regulatory Networks with Skewed Degree Distribution

Inferencing Gene Regulatory Networks (GRNs) from gene expression data is a pivotal challenge in systems biology, and several innovative computational methods have been introduced. However, most of these studies have not considered the skewed degree distribution of genes. Specifically, some genes may regulate multiple target genes while some genes may be regulated by multiple regulator genes. Such a skewed degree distribution issue significantly complicates the application of directed graph embedding methods. To tackle this issue, we propose the Cross-Attention Complex Dual Graph Embedding Model (XATGRN). Our XATGRN employs a cross-attention mechanism to effectively capture intricate gene interactions from gene expression profiles. Additionally, it uses a Dual Complex Graph Embedding approach to manage the skewed degree distribution, thereby ensuring precise prediction of regulatory relationships and their directionality. Our model consistently outperforms existing state-of-the-art methods across various datasets, underscoring its efficacy in elucidating complex gene regulatory mechanisms. Our codes used in this paper are publicly available at: https://github.com/kikixiong/XATGRN.