Pathological Semantics-Preserving Learning for H&E-to-IHC Virtual Staining

Conventional hematoxylin-eosin (H&E) staining is limited to revealing cell morphology and distribution, whereas immunohistochemical (IHC) staining provides precise and specific visualization of protein activation at the molecular level. Virtual staining technology has emerged as a solution for highly efficient IHC examination, which directly transforms H&E-stained images to IHC-stained images. However, virtual staining is challenged by the insufficient mining of pathological semantics and the spatial misalignment of pathological semantics. To address these issues, we propose the Pathological Semantics-Preserving Learning method for Virtual Staining (PSPStain), which directly incorporates the molecular-level semantic information and enhances semantics interaction despite any spatial inconsistency. Specifically, PSPStain comprises two novel learning strategies: 1) Protein-Aware Learning Strategy (PALS) with Focal Optical Density (FOD) map maintains the coherence of protein expression level, which represents molecular-level semantic information; 2) Prototype-Consistent Learning Strategy (PCLS), which enhances cross-image semantic interaction by prototypical consistency learning. We evaluate PSPStain on two public datasets using five metrics: three clinically relevant metrics and two for image quality. Extensive experiments indicate that PSPStain outperforms current state-of-the-art H&E-to-IHC virtual staining methods and demonstrates a high pathological correlation between the staging of real and virtual stains.

Spectral Classification Using Restricted Boltzmann Machine

In this study, a novel machine learning algorithm, restricted Boltzmann machine (RBM), is introduced. The algorithm is applied for the spectral classification in astronomy. RBM is a bipartite generative graphical model with two separate layers (one visible layer and one hidden layer), which can extract higher level features to represent the original data. Despite generative, RBM can be used for classification when modified with a free energy and a soft-max function. Before spectral classification, the original data is binarized according to some rule. Then we resort to the binary RBM to classify cataclysmic variables (CVs) and non-CVs (one half of all the given data for training and the other half for testing). The experiment result shows state-of-the-art accuracy of 100%, which indicates the efficiency of the binary RBM algorithm.

An Improved EM algorithm

In this paper, we firstly give a brief introduction of expectation maximization (EM) algorithm, and then discuss the initial value sensitivity of expectation maximization algorithm. Subsequently, we give a short proof of EM's convergence. Then, we implement experiments with the expectation maximization algorithm (We implement all the experiments on Gaussion mixture model (GMM)). Our experiment with expectation maximization is performed in the following three cases: initialize randomly; initialize with result of K-means; initialize with result of K-medoids. The experiment result shows that expectation maximization algorithm depend on its initial state or parameters. And we found that EM initialized with K-medoids performed better than both the one initialized with K-means and the one initialized randomly.