Investigating Gender Bias in Lymph-node Segmentation with Anatomical Priors

Radiotherapy requires precise segmentation of organs at risk (OARs) and of the Clinical Target Volume (CTV) to maximize treatment efficacy and minimize toxicity. While deep learning (DL) has significantly advanced automatic contouring, complex targets like CTVs remain challenging. This study explores the use of simpler, well-segmented structures (e.g., OARs) as Anatomical Prior (AP) information to improve CTV segmentation. We investigate gender bias in segmentation models and the mitigation effect of the prior information. Findings indicate that incorporating prior knowledge with the discussed strategies enhances segmentation quality in female patients and reduces gender bias, particularly in the abdomen region. This research provides a comparative analysis of new encoding strategies and highlights the potential of using AP to achieve fairer segmentation outcomes.

Leveraging Multimodal CycleGAN for the Generation of Anatomically Accurate Synthetic CT Scans from MRIs

In many clinical settings, the use of both Computed Tomography (CT) and Magnetic Resonance (MRI) is necessary to pursue a thorough understanding of the patient's anatomy and to plan a suitable therapeutical strategy; this is often the case in MRI-based radiotherapy, where CT is always necessary to prepare the dose delivery, as it provides the essential information about the radiation absorption properties of the tissues. Sometimes, MRI is preferred to contour the target volumes. However, this approach is often not the most efficient, as it is more expensive, time-consuming and, most importantly, stressful for the patients. To overcome this issue, in this work, we analyse the capabilities of different configurations of Deep Learning models to generate synthetic CT scans from MRI, leveraging the power of Generative Adversarial Networks (GANs) and, in particular, the CycleGAN architecture, capable of working in an unsupervised manner and without paired images, which were not available. Several CycleGAN models were trained unsupervised to generate CT scans from different MRI modalities with and without contrast agents. To overcome the problem of not having a ground truth, distribution-based metrics were used to assess the model's performance quantitatively, together with a qualitative evaluation where physicians were asked to differentiate between real and synthetic images to understand how realistic the generated images were. The results show how, depending on the input modalities, the models can have very different performances; however, models with the best quantitative results, according to the distribution-based metrics used, can generate very difficult images to distinguish from the real ones, even for physicians, demonstrating the approach's potential.

Deep Learning-Based Auto-Segmentation of Planning Target Volume for Total Marrow and Lymph Node Irradiation

In order to optimize the radiotherapy delivery for cancer treatment, especially when dealing with complex treatments such as Total Marrow and Lymph Node Irradiation (TMLI), the accurate contouring of the Planning Target Volume (PTV) is crucial. Unfortunately, relying on manual contouring for such treatments is time-consuming and prone to errors. In this paper, we investigate the application of Deep Learning (DL) to automate the segmentation of the PTV in TMLI treatment, building upon previous work that introduced a solution to this problem based on a 2D U-Net model. We extend the previous research (i) by employing the nnU-Net framework to develop both 2D and 3D U-Net models and (ii) by evaluating the trained models on the PTV with the exclusion of bones, which consist mainly of lymp-nodes and represent the most challenging region of the target volume to segment. Our result show that the introduction of nnU-NET framework led to statistically significant improvement in the segmentation performance. In addition, the analysis on the PTV after the exclusion of bones showed that the models are quite robust also on the most challenging areas of the target volume. Overall, our study is a significant step forward in the application of DL in a complex radiotherapy treatment such as TMLI, offering a viable and scalable solution to increase the number of patients who can benefit from this treatment.

A Tool for the Procedural Generation of Shaders using Interactive Evolutionary Algorithms

We present a tool for exploring the design space of shaders using an interactive evolutionary algorithm integrated with the Unity editor, a well-known commercial tool for video game development. Our framework leverages the underlying graph-based representation of recent shader editors and interactive evolution to allow designers to explore several visual options starting from an existing shader. Our framework encodes the graph representation of a current shader as a chromosome used to seed the evolution of a shader population. It applies graph-based recombination and mutation with a set of heuristics to create feasible shaders. The framework is an extension of the Unity editor; thus, designers with little knowledge of evolutionary computation (and shader programming) can interact with the underlying evolutionary engine using the same visual interface used for working on game scenes.

Segmentation of Planning Target Volume in CT Series for Total Marrow Irradiation Using U-Net

Radiotherapy (RT) is a key component in the treatment of various cancers, including Acute Lymphocytic Leukemia (ALL) and Acute Myelogenous Leukemia (AML). Precise delineation of organs at risk (OARs) and target areas is essential for effective treatment planning. Intensity Modulated Radiotherapy (IMRT) techniques, such as Total Marrow Irradiation (TMI) and Total Marrow and Lymph node Irradiation (TMLI), provide more precise radiation delivery compared to Total Body Irradiation (TBI). However, these techniques require time-consuming manual segmentation of structures in Computerized Tomography (CT) scans by the Radiation Oncologist (RO). In this paper, we present a deep learning-based auto-contouring method for segmenting Planning Target Volume (PTV) for TMLI treatment using the U-Net architecture. We trained and compared two segmentation models with two different loss functions on a dataset of 100 patients treated with TMLI at the Humanitas Research Hospital between 2011 and 2021. Despite challenges in lymph node areas, the best model achieved an average Dice score of 0.816 for PTV segmentation. Our findings are a preliminary but significant step towards developing a segmentation model that has the potential to save radiation oncologists a considerable amount of time. This could allow for the treatment of more patients, resulting in improved clinical practice efficiency and more reproducible contours.

Ensemble Methods for Multi-Organ Segmentation in CT Series

In the medical images field, semantic segmentation is one of the most important, yet difficult and time-consuming tasks to be performed by physicians. Thanks to the recent advancement in the Deep Learning models regarding Computer Vision, the promise to automate this kind of task is getting more and more realistic. However, many problems are still to be solved, like the scarce availability of data and the difficulty to extend the efficiency of highly specialised models to general scenarios. Organs at risk segmentation for radiotherapy treatment planning falls in this category, as the limited data available negatively affects the possibility to develop general-purpose models; in this work, we focus on the possibility to solve this problem by presenting three types of ensembles of single-organ models able to produce multi-organ masks exploiting the different specialisations of their components. The results obtained are promising and prove that this is a possible solution to finding efficient multi-organ segmentation methods.

Comparing Adversarial and Supervised Learning for Organs at Risk Segmentation in CT images

Organ at Risk (OAR) segmentation from CT scans is a key component of the radiotherapy treatment workflow. In recent years, deep learning techniques have shown remarkable potential in automating this process. In this paper, we investigate the performance of Generative Adversarial Networks (GANs) compared to supervised learning approaches for segmenting OARs from CT images. We propose three GAN-based models with identical generator architectures but different discriminator networks. These models are compared with well-established CNN models, such as SE-ResUnet and DeepLabV3, using the StructSeg dataset, which consists of 50 annotated CT scans containing contours of six OARs. Our work aims to provide insight into the advantages and disadvantages of adversarial training in the context of OAR segmentation. The results are very promising and show that the proposed GAN-based approaches are similar or superior to their CNN-based counterparts, particularly when segmenting more challenging target organs.

Distributed Learning Approaches for Automated Chest X-Ray Diagnosis

Deep Learning has established in the latest years as a successful approach to address a great variety of tasks. Healthcare is one of the most promising field of application for Deep Learning approaches since it would allow to help clinicians to analyze patient data and perform diagnoses. However, despite the vast amount of data collected every year in hospitals and other clinical institutes, privacy regulations on sensitive data - such as those related to health - pose a serious challenge to the application of these methods. In this work, we focus on strategies to cope with privacy issues when a consortium of healthcare institutions needs to train machine learning models for identifying a particular disease, comparing the performances of two recent distributed learning approaches - Federated Learning and Split Learning - on the task of Automated Chest X-Ray Diagnosis. In particular, in our analysis we investigated the impact of different data distributions in client data and the possible policies on the frequency of data exchange between the institutions.

Chest X-Rays Image Classification from beta-Variational Autoencoders Latent Features

Chest X-Ray (CXR) is one of the most common diagnostic techniques used in everyday clinical practice all around the world. We hereby present a work which intends to investigate and analyse the use of Deep Learning (DL) techniques to extract information from such images and allow to classify them, trying to keep our methodology as general as possible and possibly also usable in a real world scenario without much effort, in the future. To move in this direction, we trained several beta-Variational Autoencoder (beta-VAE) models on the CheXpert dataset, one of the largest publicly available collection of labeled CXR images; from these models, latent features have been extracted and used to train other Machine Learning models, able to classify the original images from the features extracted by the beta-VAE. Lastly, tree-based models have been combined together in ensemblings to improve the results without the necessity of further training or models engineering. Expecting some drop in pure performance with the respect to state of the art classification specific models, we obtained encouraging results, which show the viability of our approach and the usability of the high level features extracted by the autoencoders for classification tasks.

Image Embedding and Model Ensembling for Automated Chest X-Ray Interpretation

Chest X-ray (CXR) is perhaps the most frequently-performed radiological investigation globally. In this work, we present and study several machine learning approaches to develop automated CXR diagnostic models. In particular, we trained several Convolutional Neural Networks (CNN) on the CheXpert dataset, a large collection of more than 200k CXR labeled images. Then, we used the trained CNNs to compute embeddings of the CXR images, in order to train two sets of tree-based classifiers from them. Finally, we described and compared three ensembling strategies to combine together the classifiers trained. Rather than expecting some performance-wise benefits, our goal in this work is showing that the above two methodologies, i.e., the extraction of image embeddings and models ensembling, can be effective and viable to solve tasks that require medical imaging understanding. Our results in that perspective are encouraging and worthy of further investigation.