A Pan-cancer Classification Model using Multi-view Feature Selection Method and Ensemble Classifier

Accurately identifying cancer samples is crucial for precise diagnosis and effective patient treatment. Traditional methods falter with high-dimensional and high feature-to-sample count ratios, which are critical for classifying cancer samples. This study aims to develop a novel feature selection framework specifically for transcriptome data and propose two ensemble classifiers. For feature selection, we partition the transcriptome dataset vertically based on feature types. Then apply the Boruta feature selection process on each of the partitions, combine the results, and apply Boruta again on the combined result. We repeat the process with different parameters of Boruta and prepare the final feature set. Finally, we constructed two ensemble ML models based on LR, SVM and XGBoost classifiers with max voting and averaging probability approach. We used 10-fold cross-validation to ensure robust and reliable classification performance. With 97.11\% accuracy and 0.9996 AUC value, our approach performs better compared to existing state-of-the-art methods to classify 33 types of cancers. A set of 12 types of cancer is traditionally challenging to differentiate between each other due to their similarity in tissue of origin. Our method accurately identifies over 90\% of samples from these 12 types of cancers, which outperforms all known methods presented in existing literature. The gene set enrichment analysis reveals that our framework's selected features have enriched the pathways highly related to cancers. This study develops a feature selection framework to select features highly related to cancer development and leads to identifying different types of cancer samples with higher accuracy.

BnSentMix: A Diverse Bengali-English Code-Mixed Dataset for Sentiment Analysis

The widespread availability of code-mixed data can provide valuable insights into low-resource languages like Bengali, which have limited datasets. Sentiment analysis has been a fundamental text classification task across several languages for code-mixed data. However, there has yet to be a large-scale and diverse sentiment analysis dataset on code-mixed Bengali. We address this limitation by introducing BnSentMix, a sentiment analysis dataset on code-mixed Bengali consisting of 20,000 samples with $4$ sentiment labels from Facebook, YouTube, and e-commerce sites. We ensure diversity in data sources to replicate realistic code-mixed scenarios. Additionally, we propose $14$ baseline methods including novel transformer encoders further pre-trained on code-mixed Bengali-English, achieving an overall accuracy of $69.8\%$ and an F1 score of $69.1\%$ on sentiment classification tasks. Detailed analyses reveal variations in performance across different sentiment labels and text types, highlighting areas for future improvement.

ChartSumm: A Comprehensive Benchmark for Automatic Chart Summarization of Long and Short Summaries

Automatic chart to text summarization is an effective tool for the visually impaired people along with providing precise insights of tabular data in natural language to the user. A large and well-structured dataset is always a key part for data driven models. In this paper, we propose ChartSumm: a large-scale benchmark dataset consisting of a total of 84,363 charts along with their metadata and descriptions covering a wide range of topics and chart types to generate short and long summaries. Extensive experiments with strong baseline models show that even though these models generate fluent and informative summaries by achieving decent scores in various automatic evaluation metrics, they often face issues like suffering from hallucination, missing out important data points, in addition to incorrect explanation of complex trends in the charts. We also investigated the potential of expanding ChartSumm to other languages using automated translation tools. These make our dataset a challenging benchmark for future research.