The rapid proliferation of large language models (LLMs) such as GPT-4 and Gemini underscores the intense demand for resources during their training processes, posing significant challenges due to substantial computational and environmental costs. To alleviate this issue, we propose checkpoint merging in pretraining LLM. This method utilizes LLM checkpoints with shared training trajectories, and is rooted in an extensive search space exploration for the best merging weight via Bayesian optimization. Through various experiments, we demonstrate that: (1) Our proposed methodology exhibits the capacity to augment pretraining, presenting an opportunity akin to obtaining substantial benefits at minimal cost; (2) Our proposed methodology, despite requiring a given held-out dataset, still demonstrates robust generalization capabilities across diverse domains, a pivotal aspect in pretraining.