Prototype-based classification is a classical method in machine learning, and recently it has achieved remarkable success in semi-supervised semantic segmentation. However, the current approach isolates the prototype initialization process from the main training framework, which appears to be unnecessary. Furthermore, while the direct use of K-Means algorithm for prototype generation has considered rich intra-class variance, it may not be the optimal solution for the classification task. To tackle these problems, we propose a novel boundary-refined prototype generation (BRPG) method, which is incorporated into the whole training framework. Specifically, our approach samples and clusters high- and low-confidence features separately based on a confidence threshold, aiming to generate prototypes closer to the class boundaries. Moreover, an adaptive prototype optimization strategy is introduced to make prototype augmentation for categories with scattered feature distributions. Extensive experiments on the PASCAL VOC 2012 and Cityscapes datasets demonstrate the superiority and scalability of the proposed method, outperforming the current state-of-the-art approaches. The code is available at xxxxxxxxxxxxxx.