Causal Lifting of Neural Representations: Zero-Shot Generalization for Causal Inferences

A plethora of real-world scientific investigations is waiting to scale with the support of trustworthy predictive models that can reduce the need for costly data annotations. We focus on causal inferences on a target experiment with unlabeled factual outcomes, retrieved by a predictive model fine-tuned on a labeled similar experiment. First, we show that factual outcome estimation via Empirical Risk Minimization (ERM) may fail to yield valid causal inferences on the target population, even in a randomized controlled experiment and infinite training samples. Then, we propose to leverage the observed experimental settings during training to empower generalization to downstream interventional investigations, ``Causal Lifting'' the predictive model. We propose Deconfounded Empirical Risk Minimization (DERM), a new simple learning procedure minimizing the risk over a fictitious target population, preventing potential confounding effects. We validate our method on both synthetic and real-world scientific data. Notably, for the first time, we zero-shot generalize causal inferences on ISTAnt dataset (without annotation) by causal lifting a predictive model on our experiment variant.

Smoke and Mirrors in Causal Downstream Tasks

Machine Learning and AI have the potential to transform data-driven scientific discovery, enabling accurate predictions for several scientific phenomena. As many scientific questions are inherently causal, this paper looks at the causal inference task of treatment effect estimation, where we assume binary effects that are recorded as high-dimensional images in a Randomized Controlled Trial (RCT). Despite being the simplest possible setting and a perfect fit for deep learning, we theoretically find that many common choices in the literature may lead to biased estimates. To test the practical impact of these considerations, we recorded the first real-world benchmark for causal inference downstream tasks on high-dimensional observations as an RCT studying how garden ants (Lasius neglectus) respond to microparticles applied onto their colony members by hygienic grooming. Comparing 6 480 models fine-tuned from state-of-the-art visual backbones, we find that the sampling and modeling choices significantly affect the accuracy of the causal estimate, and that classification accuracy is not a proxy thereof. We further validated the analysis, repeating it on a synthetically generated visual data set controlling the causal model. Our results suggest that future benchmarks should carefully consider real downstream scientific questions, especially causal ones. Further, we highlight guidelines for representation learning methods to help answer causal questions in the sciences. All code and data will be released.