Localized Persistent Homologies for more Effective Deep Learning

Persistent Homologies have been successfully used to increase the performance of deep networks trained to detect curvilinear structures and to improve the topological quality of the results. However, existing methods are very global and ignore the location of topological features. In this paper, we introduce an approach that relies on a new filtration function to account for location during network training. We demonstrate experimentally on 2D images of roads and 3D image stacks of neuronal processes that networks trained in this manner are better at recovering the topology of the curvilinear structures they extract.

giotto-tda: A Topological Data Analysis Toolkit for Machine Learning and Data Exploration

We introduce giotto-tda, a Python library that integrates high-performance topological data analysis with machine learning via a scikit-learn-compatible API and state-of-the-art C++ implementations. The library's ability to handle various types of data is rooted in a wide range of preprocessing techniques, and its strong focus on data exploration and interpretability is aided by an intuitive plotting API. Source code, binaries, examples, and documentation can be found at https://github.com/giotto-ai/giotto-tda.