Nonhuman Primate Brain Tissue Segmentation Using a Transfer Learning Approach

Non-human primates (NHPs) serve as critical models for understanding human brain function and neurological disorders due to their close evolutionary relationship with humans. Accurate brain tissue segmentation in NHPs is critical for understanding neurological disorders, but challenging due to the scarcity of annotated NHP brain MRI datasets, the small size of the NHP brain, the limited resolution of available imaging data and the anatomical differences between human and NHP brains. To address these challenges, we propose a novel approach utilizing STU-Net with transfer learning to leverage knowledge transferred from human brain MRI data to enhance segmentation accuracy in the NHP brain MRI, particularly when training data is limited. The combination of STU-Net and transfer learning effectively delineates complex tissue boundaries and captures fine anatomical details specific to NHP brains. Notably, our method demonstrated improvement in segmenting small subcortical structures such as putamen and thalamus that are challenging to resolve with limited spatial resolution and tissue contrast, and achieved DSC of over 0.88, IoU over 0.8 and HD95 under 7. This study introduces a robust method for multi-class brain tissue segmentation in NHPs, potentially accelerating research in evolutionary neuroscience and preclinical studies of neurological disorders relevant to human health.

Synthesizing beta-amyloid PET images from T1-weighted Structural MRI: A Preliminary Study

Beta-amyloid positron emission tomography (A$\beta$-PET) imaging has become a critical tool in Alzheimer's disease (AD) research and diagnosis, providing insights into the pathological accumulation of amyloid plaques, one of the hallmarks of AD. However, the high cost, limited availability, and exposure to radioactivity restrict the widespread use of A$\beta$-PET imaging, leading to a scarcity of comprehensive datasets. Previous studies have suggested that structural magnetic resonance imaging (MRI), which is more readily available, may serve as a viable alternative for synthesizing A$\beta$-PET images. In this study, we propose an approach to utilize 3D diffusion models to synthesize A$\beta$-PET images from T1-weighted MRI scans, aiming to overcome the limitations associated with direct PET imaging. Our method generates high-quality A$\beta$-PET images for cognitive normal cases, although it is less effective for mild cognitive impairment (MCI) patients due to the variability in A$\beta$ deposition patterns among subjects. Our preliminary results suggest that incorporating additional data, such as a larger sample of MCI cases and multi-modality information including clinical and demographic details, cognitive and functional assessments, and longitudinal data, may be necessary to improve A$\beta$-PET image synthesis for MCI patients.