Geometric Algebra Planes: Convex Implicit Neural Volumes

Volume parameterizations abound in recent literature, from the classic voxel grid to the implicit neural representation and everything in between. While implicit representations have shown impressive capacity and better memory efficiency compared to voxel grids, to date they require training via nonconvex optimization. This nonconvex training process can be slow to converge and sensitive to initialization and hyperparameter choices that affect the final converged result. We introduce a family of models, GA-Planes, that is the first class of implicit neural volume representations that can be trained by convex optimization. GA-Planes models include any combination of features stored in tensor basis elements, followed by a neural feature decoder. They generalize many existing representations and can be adapted for convex, semiconvex, or nonconvex training as needed for different inverse problems. In the 2D setting, we prove that GA-Planes is equivalent to a low-rank plus low-resolution matrix factorization; we show that this approximation outperforms the classic low-rank plus sparse decomposition for fitting a natural image. In 3D, we demonstrate GA-Planes' competitive performance in terms of expressiveness, model size, and optimizability across three volume fitting tasks: radiance field reconstruction, 3D segmentation, and video segmentation.

A plug-in graph neural network to boost temporal sensitivity in fMRI analysis

Learning-based methods have recently enabled performance leaps in analysis of high-dimensional functional MRI (fMRI) time series. Deep learning models that receive as input functional connectivity (FC) features among brain regions have been commonly adopted in the literature. However, many models focus on temporally static FC features across a scan, reducing sensitivity to dynamic features of brain activity. Here, we describe a plug-in graph neural network that can be flexibly integrated into a main learning-based fMRI model to boost its temporal sensitivity. Receiving brain regions as nodes and blood-oxygen-level-dependent (BOLD) signals as node inputs, the proposed GraphCorr method leverages a node embedder module based on a transformer encoder to capture temporally-windowed latent representations of BOLD signals. GraphCorr also leverages a lag filter module to account for delayed interactions across nodes by computing cross-correlation of windowed BOLD signals across a range of time lags. Information captured by the two modules is fused via a message passing algorithm executed on the graph, and enhanced node features are then computed at the output. These enhanced features are used to drive a subsequent learning-based model to analyze fMRI time series with elevated sensitivity. Comprehensive demonstrations on two public datasets indicate improved classification performance and interpretability for several state-of-the-art graphical and convolutional methods that employ GraphCorr-derived feature representations of fMRI time series as their input.