Causal machine learning for sustainable agroecosystems

In a changing climate, sustainable agriculture is essential for food security and environmental health. However, it is challenging to understand the complex interactions among its biophysical, social, and economic components. Predictive machine learning (ML), with its capacity to learn from data, is leveraged in sustainable agriculture for applications like yield prediction and weather forecasting. Nevertheless, it cannot explain causal mechanisms and remains descriptive rather than prescriptive. To address this gap, we propose causal ML, which merges ML's data processing with causality's ability to reason about change. This facilitates quantifying intervention impacts for evidence-based decision-making and enhances predictive model robustness. We showcase causal ML through eight diverse applications that benefit stakeholders across the agri-food chain, including farmers, policymakers, and researchers.

Causality and Explainability for Trustworthy Integrated Pest Management

Pesticides serve as a common tool in agricultural pest control but significantly contribute to the climate crisis. To combat this, Integrated Pest Management (IPM) stands as a climate-smart alternative. Despite its potential, IPM faces low adoption rates due to farmers' skepticism about its effectiveness. To address this challenge, we introduce an advanced data analysis framework tailored to enhance IPM adoption. Our framework provides i) robust pest population predictions across diverse environments with invariant and causal learning, ii) interpretable pest presence predictions using transparent models, iii) actionable advice through counterfactual explanations for in-season IPM interventions, iv) field-specific treatment effect estimations, and v) assessments of the effectiveness of our advice using causal inference. By incorporating these features, our framework aims to alleviate skepticism and encourage wider adoption of IPM practices among farmers.

Understanding the impacts of crop diversification in the context of climate change: a machine learning approach

The concept of sustainable intensification in agriculture necessitates the implementation of management practices that prioritize sustainability without compromising productivity. However, the effects of such practices are known to depend on environmental conditions, and are therefore expected to change as a result of a changing climate. We study the impact of crop diversification on productivity in the context of climate change. We leverage heterogeneous Earth Observation data and contribute a data-driven approach based on causal machine learning for understanding how crop diversification impacts may change in the future. We apply this method to the country of Cyprus throughout a 4-year period. We find that, on average, crop diversification significantly benefited the net primary productivity of crops, increasing it by 2.8%. The effect generally synergized well with higher maximum temperatures and lower soil moistures. In a warmer and more drought-prone climate, we conclude that crop diversification exhibits promising adaptation potential and is thus a sensible policy choice with regards to agricultural productivity for present and future.

Fuzzy clustering for the within-season estimation of cotton phenology

Crop phenology is crucial information for crop yield estimation and agricultural management. Traditionally, phenology has been observed from the ground; however Earth observation, weather and soil data have been used to capture the physiological growth of crops. In this work, we propose a new approach for the within-season phenology estimation for cotton at the field level. For this, we exploit a variety of Earth observation vegetation indices (derived from Sentinel-2) and numerical simulations of atmospheric and soil parameters. Our method is unsupervised to address the ever-present problem of sparse and scarce ground truth data that makes most supervised alternatives impractical in real-world scenarios. We applied fuzzy c-means clustering to identify the principal phenological stages of cotton and then used the cluster membership weights to further predict the transitional phases between adjacent stages. In order to evaluate our models, we collected 1,285 crop growth ground observations in Orchomenos, Greece. We introduced a new collection protocol, assigning up to two phenology labels that represent the primary and secondary growth stage in the field and thus indicate when stages are transitioning. Our model was tested against a baseline model that allowed to isolate the random agreement and evaluate its true competence. The results showed that our model considerably outperforms the baseline one, which is promising considering the unsupervised nature of the approach. The limitations and the relevant future work are thoroughly discussed. The ground observations are formatted in an ready-to-use dataset and will be available at https://github.com/Agri-Hub/cotton-phenology-dataset upon publication.

Evaluating Digital Agriculture Recommendations with Causal Inference

In contrast to the rapid digitalization of several industries, agriculture suffers from low adoption of smart farming tools. While AI-driven digital agriculture tools can offer high-performing predictive functionalities, they lack tangible quantitative evidence on their benefits to the farmers. Field experiments can derive such evidence, but are often costly, time consuming and hence limited in scope and scale of application. To this end, we propose an observational causal inference framework for the empirical evaluation of the impact of digital tools on target farm performance indicators (e.g., yield in this case). This way, we can increase farmers' trust via enhancing the transparency of the digital agriculture market and accelerate the adoption of technologies that aim to secure farmer income resilience and global agricultural sustainability. As a case study, we designed and implemented a recommendation system for the optimal sowing time of cotton based on numerical weather predictions, which was used by a farmers' cooperative during the growing season of 2021. We then leverage agricultural knowledge, collected yield data, and environmental information to develop a causal graph of the farm system. Using the back-door criterion, we identify the impact of sowing recommendations on the yield and subsequently estimate it using linear regression, matching, inverse propensity score weighting and meta-learners. The results reveal that a field sown according to our recommendations exhibited a statistically significant yield increase that ranged from 12% to 17%, depending on the method. The effect estimates were robust, as indicated by the agreement among the estimation methods and four successful refutation tests. We argue that this approach can be implemented for decision support systems of other fields, extending their evaluation beyond a performance assessment of internal functionalities.

Evaluating Digital Tools for Sustainable Agriculture using Causal Inference

In contrast to the rapid digitalization of several industries, agriculture suffers from low adoption of climate-smart farming tools. Even though AI-driven digital agriculture can offer high-performing predictive functionalities, it lacks tangible quantitative evidence on its benefits to the farmers. Field experiments can derive such evidence, but are often costly and time consuming. To this end, we propose an observational causal inference framework for the empirical evaluation of the impact of digital tools on target farm performance indicators. This way, we can increase farmers' trust by enhancing the transparency of the digital agriculture market, and in turn accelerate the adoption of technologies that aim to increase productivity and secure a sustainable and resilient agriculture against a changing climate. As a case study, we perform an empirical evaluation of a recommendation system for optimal cotton sowing, which was used by a farmers' cooperative during the growing season of 2021. We leverage agricultural knowledge to develop a causal graph of the farm system, we use the back-door criterion to identify the impact of recommendations on the yield and subsequently estimate it using several methods on observational data. The results show that a field sown according to our recommendations enjoyed a significant increase in yield (12% to 17%).

Pest presence prediction using interpretable machine learning

Helicoverpa Armigera, or cotton bollworm, is a serious insect pest of cotton crops that threatens the yield and the quality of lint. The timely knowledge of the presence of the insects in the field is crucial for effective farm interventions. Meteo-climatic and vegetation conditions have been identified as key drivers of crop pest abundance. In this work, we applied an interpretable classifier, i.e., Explainable Boosting Machine, which uses earth observation vegetation indices, numerical weather predictions and insect trap catches to predict the onset of bollworm harmfulness in cotton fields in Greece. The glass-box nature of our approach provides significant insight on the main drivers of the model and the interactions among them. Model interpretability adds to the trustworthiness of our approach and therefore its potential for rapid uptake and context-based implementation in operational farm management scenarios. Our results are satisfactory and the importance of drivers, through our analysis on global and local explainability, is in accordance with the literature.