Scalar Function Topology Divergence: Comparing Topology of 3D Objects

We propose a new topological tool for computer vision - Scalar Function Topology Divergence (SFTD), which measures the dissimilarity of multi-scale topology between sublevel sets of two functions having a common domain. Functions can be defined on an undirected graph or Euclidean space of any dimensionality. Most of the existing methods for comparing topology are based on Wasserstein distance between persistence barcodes and they don't take into account the localization of topological features. On the other hand, the minimization of SFTD ensures that the corresponding topological features of scalar functions are located in the same places. The proposed tool provides useful visualizations depicting areas where functions have topological dissimilarities. We provide applications of the proposed method to 3D computer vision. In particular, experiments demonstrate that SFTD improves the reconstruction of cellular 3D shapes from 2D fluorescence microscopy images, and helps to identify topological errors in 3D segmentation.

Disentanglement Learning via Topology

We propose TopDis (Topological Disentanglement), a method for learning disentangled representations via adding multi-scale topological loss term. Disentanglement is a crucial property of data representations substantial for the explainability and robustness of deep learning models and a step towards high-level cognition. The state-of-the-art method based on VAE minimizes the total correlation of the joint distribution of latent variables. We take a different perspective on disentanglement by analyzing topological properties of data manifolds. In particular, we optimize the topological similarity for data manifolds traversals. To the best of our knowledge, our paper is the first one to propose a differentiable topological loss for disentanglement. Our experiments have shown that the proposed topological loss improves disentanglement scores such as MIG, FactorVAE score, SAP score and DCI disentanglement score with respect to state-of-the-art results. Our method works in an unsupervised manner, permitting to apply it for problems without labeled factors of variation. Additionally, we show how to use the proposed topological loss to find disentangled directions in a trained GAN.