ConKeD++ -- Improving descriptor learning for retinal image registration: A comprehensive study of contrastive losses

Self-supervised contrastive learning has emerged as one of the most successful deep learning paradigms. In this regard, it has seen extensive use in image registration and, more recently, in the particular field of medical image registration. In this work, we propose to test and extend and improve a state-of-the-art framework for color fundus image registration, ConKeD. Using the ConKeD framework we test multiple loss functions, adapting them to the framework and the application domain. Furthermore, we evaluate our models using the standarized benchmark dataset FIRE as well as several datasets that have never been used before for color fundus registration, for which we are releasing the pairing data as well as a standardized evaluation approach. Our work demonstrates state-of-the-art performance across all datasets and metrics demonstrating several advantages over current SOTA color fundus registration methods

ConKeD: Multiview contrastive descriptor learning for keypoint-based retinal image registration

Retinal image registration is of utmost importance due to its wide applications in medical practice. In this context, we propose ConKeD, a novel deep learning approach to learn descriptors for retinal image registration. In contrast to current registration methods, our approach employs a novel multi-positive multi-negative contrastive learning strategy that enables the utilization of additional information from the available training samples. This makes it possible to learn high quality descriptors from limited training data. To train and evaluate ConKeD, we combine these descriptors with domain-specific keypoints, particularly blood vessel bifurcations and crossovers, that are detected using a deep neural network. Our experimental results demonstrate the benefits of the novel multi-positive multi-negative strategy, as it outperforms the widely used triplet loss technique (single-positive and single-negative) as well as the single-positive multi-negative alternative. Additionally, the combination of ConKeD with the domain-specific keypoints produces comparable results to the state-of-the-art methods for retinal image registration, while offering important advantages such as avoiding pre-processing, utilizing fewer training samples, and requiring fewer detected keypoints, among others. Therefore, ConKeD shows a promising potential towards facilitating the development and application of deep learning-based methods for retinal image registration.

Weakly-supervised detection of AMD-related lesions in color fundus images using explainable deep learning

Age-related macular degeneration (AMD) is a degenerative disorder affecting the macula, a key area of the retina for visual acuity. Nowadays, it is the most frequent cause of blindness in developed countries. Although some promising treatments have been developed, their effectiveness is low in advanced stages. This emphasizes the importance of large-scale screening programs. Nevertheless, implementing such programs for AMD is usually unfeasible, since the population at risk is large and the diagnosis is challenging. All this motivates the development of automatic methods. In this sense, several works have achieved positive results for AMD diagnosis using convolutional neural networks (CNNs). However, none incorporates explainability mechanisms, which limits their use in clinical practice. In that regard, we propose an explainable deep learning approach for the diagnosis of AMD via the joint identification of its associated retinal lesions. In our proposal, a CNN is trained end-to-end for the joint task using image-level labels. The provided lesion information is of clinical interest, as it allows to assess the developmental stage of AMD. Additionally, the approach allows to explain the diagnosis from the identified lesions. This is possible thanks to the use of a CNN with a custom setting that links the lesions and the diagnosis. Furthermore, the proposed setting also allows to obtain coarse lesion segmentation maps in a weakly-supervised way, further improving the explainability. The training data for the approach can be obtained without much extra work by clinicians. The experiments conducted demonstrate that our approach can identify AMD and its associated lesions satisfactorily, while providing adequate coarse segmentation maps for most common lesions.

Simultaneous segmentation and classification of the retinal arteries and veins from color fundus images

The study of the retinal vasculature is a fundamental stage in the screening and diagnosis of many diseases. A complete retinal vascular analysis requires to segment and classify the blood vessels of the retina into arteries and veins (A/V). Early automatic methods approached these segmentation and classification tasks in two sequential stages. However, currently, these tasks are approached as a joint semantic segmentation task, as the classification results highly depend on the effectiveness of the vessel segmentation. In that regard, we propose a novel approach for the simultaneous segmentation and classification of the retinal A/V from eye fundus images. In particular, we propose a novel method that, unlike previous approaches, and thanks to a novel loss, decomposes the joint task into three segmentation problems targeting arteries, veins and the whole vascular tree. This configuration allows to handle vessel crossings intuitively and directly provides accurate segmentation masks of the different target vascular trees. The provided ablation study on the public Retinal Images vessel Tree Extraction (RITE) dataset demonstrates that the proposed method provides a satisfactory performance, particularly in the segmentation of the different structures. Furthermore, the comparison with the state of the art shows that our method achieves highly competitive results in A/V classification, while significantly improving vascular segmentation. The proposed multi-segmentation method allows to detect more vessels and better segment the different structures, while achieving a competitive classification performance. Also, in these terms, our approach outperforms the approaches of various reference works. Moreover, in contrast with previous approaches, the proposed method allows to directly detect the vessel crossings, as well as preserving the continuity of A/V at these complex locations.

Improving AMD diagnosis by the simultaneous identification of associated retinal lesions

Age-related Macular Degeneration (AMD) is the predominant cause of blindness in developed countries, specially in elderly people. Moreover, its prevalence is increasing due to the global population ageing. In this scenario, early detection is crucial to avert later vision impairment. Nonetheless, implementing large-scale screening programmes is usually not viable, since the population at-risk is large and the analysis must be performed by expert clinicians. Also, the diagnosis of AMD is considered to be particularly difficult, as it is characterized by many different lesions that, in many cases, resemble those of other macular diseases. To overcome these issues, several works have proposed automatic methods for the detection of AMD in retinography images, the most widely used modality for the screening of the disease. Nowadays, most of these works use Convolutional Neural Networks (CNNs) for the binary classification of images into AMD and non-AMD classes. In this work, we propose a novel approach based on CNNs that simultaneously performs AMD diagnosis and the classification of its potential lesions. This latter secondary task has not yet been addressed in this domain, and provides complementary useful information that improves the diagnosis performance and helps understanding the decision. A CNN model is trained using retinography images with image-level labels for both AMD and lesion presence, which are relatively easy to obtain. The experiments conducted in several public datasets show that the proposed approach improves the detection of AMD, while achieving satisfactory results in the identification of most lesions.

Multimodal Transfer Learning-based Approaches for Retinal Vascular Segmentation

In ophthalmology, the study of the retinal microcirculation is a key issue in the analysis of many ocular and systemic diseases, like hypertension or diabetes. This motivates the research on improving the retinal vasculature segmentation. Nowadays, Fully Convolutional Neural Networks (FCNs) usually represent the most successful approach to image segmentation. However, the success of these models is conditioned by an adequate selection and adaptation of the architectures and techniques used, as well as the availability of a large amount of annotated data. These two issues become specially relevant when applying FCNs to medical image segmentation as, first, the existent models are usually adjusted from broad domain applications over photographic images, and second, the amount of annotated data is usually scarcer. In this work, we present multimodal transfer learning-based approaches for retinal vascular segmentation, performing a comparative study of recent FCN architectures. In particular, to overcome the annotated data scarcity, we propose the novel application of self-supervised network pretraining that takes advantage of existent unlabelled multimodal data. The results demonstrate that the self-supervised pretrained networks obtain significantly better vascular masks with less training in the target task, independently of the network architecture, and that some FCN architecture advances motivated for broad domain applications do not translate into significant improvements over the vasculature segmentation task.

Multimodal Registration of Retinal Images Using Domain-Specific Landmarks and Vessel Enhancement

The analysis of different image modalities is frequently performed in ophthalmology as it provides complementary information for the diagnosis and follow-up of relevant diseases, like hypertension or diabetes. This work presents a hybrid method for the multimodal registration of color fundus retinography and fluorescein angiography. The proposed method combines a feature-based approach, using domain-specific landmarks, with an intensity-based approach that employs a domain-adapted similarity metric. The methodology is tested on a dataset of 59 image pairs containing both healthy and pathological cases. The results show a satisfactory performance of the proposed combined approach in this multimodal scenario, improving the registration accuracy achieved by the feature-based and the intensity-based approaches.