The point spread function reflects the state of an optical telescope and it is important for data post-processing methods design. For wide field small aperture telescopes, the point spread function is hard to model, because it is affected by many different effects and has strong temporal and spatial variations. In this paper, we propose to use the denoising autoencoder, a type of deep neural network, to model the point spread function of wide field small aperture telescopes. The denoising autoencoder is a pure data based point spread function modelling method, which uses calibration data from real observations or numerical simulated results as point spread function templates. According to real observation conditions, different levels of random noise or aberrations are added to point spread function templates, making them as realizations of the point spread function, i.e., simulated star images. Then we train the denoising autoencoder with realizations and templates of the point spread function. After training, the denoising autoencoder learns the manifold space of the point spread function and can map any star images obtained by wide field small aperture telescopes directly to its point spread function, which could be used to design data post-processing or optical system alignment methods.