Vocabulary adaptation, which integrates new vocabulary into pre-trained language models (LMs), enables expansion to new languages and mitigates token over-fragmentation. However, existing approaches are limited by their reliance on heuristic or external embeddings. We propose VocADT, a novel method for vocabulary adaptation using adapter modules that are trained to learn the optimal linear combination of existing embeddings while keeping the model's weights fixed. VocADT offers a flexible and scalable solution without requiring external resources or language constraints. Across 11 languages-with various scripts, resource availability, and fragmentation-we demonstrate that VocADT outperforms the original Mistral model and other baselines across various multilingual tasks. We find that Latin-script languages and highly fragmented languages benefit the most from vocabulary adaptation. We further fine-tune the adapted model on the generative task of machine translation and find that vocabulary adaptation is still beneficial after fine-tuning and that VocADT is the most effective method.