Deep Neural Cellular Potts Models

The cellular Potts model (CPM) is a powerful computational method for simulating collective spatiotemporal dynamics of biological cells. To drive the dynamics, CPMs rely on physics-inspired Hamiltonians. However, as first principles remain elusive in biology, these Hamiltonians only approximate the full complexity of real multicellular systems. To address this limitation, we propose NeuralCPM, a more expressive cellular Potts model that can be trained directly on observational data. At the core of NeuralCPM lies the Neural Hamiltonian, a neural network architecture that respects universal symmetries in collective cellular dynamics. Moreover, this approach enables seamless integration of domain knowledge by combining known biological mechanisms and the expressive Neural Hamiltonian into a hybrid model. Our evaluation with synthetic and real-world multicellular systems demonstrates that NeuralCPM is able to model cellular dynamics that cannot be accounted for by traditional analytical Hamiltonians.

One-Shot Federated Learning with Bayesian Pseudocoresets

Optimization-based techniques for federated learning (FL) often come with prohibitive communication cost, as high dimensional model parameters need to be communicated repeatedly between server and clients. In this paper, we follow a Bayesian approach allowing to perform FL with one-shot communication, by solving the global inference problem as a product of local client posteriors. For models with multi-modal likelihoods, such as neural networks, a naive application of this scheme is hampered, since clients will capture different posterior modes, causing a destructive collapse of the posterior on the server side. Consequently, we explore approximate inference in the function-space representation of client posteriors, hence suffering less or not at all from multi-modality. We show that distributed function-space inference is tightly related to learning Bayesian pseudocoresets and develop a tractable Bayesian FL algorithm on this insight. We show that this approach achieves prediction performance competitive to state-of-the-art while showing a striking reduction in communication cost of up to two orders of magnitude. Moreover, due to its Bayesian nature, our method also delivers well-calibrated uncertainty estimates.