Abstract:Atomistic simulations are a powerful tool for studying the dynamics of molecules, proteins, and materials on wide time and length scales. Their reliability and predictiveness, however, depend directly on the accuracy of the underlying potential energy surface (PES). Guided by the principle of parsimony this work introduces KerNN, a combined kernel/neural network-based approach to represent molecular PESs. Compared to state-of-the-art neural network PESs the number of learnable parameters of KerNN is significantly reduced. This speeds up training and evaluation times by several orders of magnitude while retaining high prediction accuracy. Importantly, using kernels as the features also improves the extrapolation capabilities of KerNN far beyond the coverage provided by the training data which solves a general problem of NN-based PESs. KerNN applied to spectroscopy and reaction dynamics shows excellent performance on test set statistics and observables including vibrational bands computed from classical and quantum simulations.
Abstract:Uncertainty quantification (UQ) to detect samples with large expected errors (outliers) is applied to reactive molecular potential energy surfaces (PESs). Three methods - Ensembles, Deep Evidential Regression (DER), and Gaussian Mixture Models (GMM) - were applied to the H-transfer reaction between ${\it syn-}$Criegee and vinyl hydroxyperoxide. The results indicate that ensemble models provide the best results for detecting outliers, followed by GMM. For example, from a pool of 1000 structures with the largest uncertainty, the detection quality for outliers is $\sim 90$ \% and $\sim 50$ \%, respectively, if 25 or 1000 structures with large errors are sought. On the contrary, the limitations of the statistical assumptions of DER greatly impacted its prediction capabilities. Finally, a structure-based indicator was found to be correlated with large average error, which may help to rapidly classify new structures into those that provide an advantage for refining the neural network.