Understanding Higher-Order Correlations Among Semantic Components in Embeddings

Independent Component Analysis (ICA) is an effective method for interpreting the intrinsic geometric structure of embeddings as semantic components. While ICA theory assumes that embeddings can be linearly decomposed into independent components, real-world data often do not satisfy this assumption. Consequently, there are remaining non-independencies between the estimated components that ICA cannot eliminate. We quantified these non-independencies using higher-order correlations and demonstrated that when the higher-order correlation between two components is large, it indicates a strong semantic association between them. The entire structure was revealed through visualization using a maximum spanning tree of semantic components. These findings allow for further understanding of embeddings through ICA.

Revisiting Cosine Similarity via Normalized ICA-transformed Embeddings

Cosine similarity is widely used to measure the similarity between two embeddings, while interpretations based on angle and correlation coefficient are common. In this study, we focus on the interpretable axes of embeddings transformed by Independent Component Analysis (ICA), and propose a novel interpretation of cosine similarity as the sum of semantic similarities over axes. To investigate this, we first show experimentally that unnormalized embeddings contain norm-derived artifacts. We then demonstrate that normalized ICA-transformed embeddings exhibit sparsity, with a few large values in each axis and across embeddings, thereby enhancing interpretability by delineating clear semantic contributions. Finally, to validate our interpretation, we perform retrieval experiments using ideal embeddings with and without specific semantic components.

Predicting Drug-Gene Relations via Analogy Tasks with Word Embeddings

Natural language processing (NLP) is utilized in a wide range of fields, where words in text are typically transformed into feature vectors called embeddings. BioConceptVec is a specific example of embeddings tailored for biology, trained on approximately 30 million PubMed abstracts using models such as skip-gram. Generally, word embeddings are known to solve analogy tasks through simple vector arithmetic. For instance, $\mathrm{\textit{king}} - \mathrm{\textit{man}} + \mathrm{\textit{woman}}$ predicts $\mathrm{\textit{queen}}$. In this study, we demonstrate that BioConceptVec embeddings, along with our own embeddings trained on PubMed abstracts, contain information about drug-gene relations and can predict target genes from a given drug through analogy computations. We also show that categorizing drugs and genes using biological pathways improves performance. Furthermore, we illustrate that vectors derived from known relations in the past can predict unknown future relations in datasets divided by year.

Discovering Universal Geometry in Embeddings with ICA

This study employs Independent Component Analysis (ICA) to uncover universal properties of embeddings of words or images. Our approach extracts independent semantic components of embeddings, enabling each embedding to be represented as a composition of intrinsic interpretable axes. We demonstrate that embeddings can be expressed as a combination of a few axes and that these semantic axes are consistent across different languages, modalities, and embedding algorithms. This discovery of universal properties in embeddings contributes to model interpretability, potentially facilitating the development of highly interpretable models and the compression of large-scale models.

Norm of word embedding encodes information gain

Distributed representations of words encode lexical semantic information, but how is that information encoded in word embeddings? Focusing on the skip-gram with negative-sampling method, we show theoretically and experimentally that the squared norm of word embedding encodes the information gain defined by the Kullback-Leibler divergence of the co-occurrence distribution of a word to the unigram distribution of the corpus. Furthermore, through experiments on tasks of keyword extraction, hypernym prediction, and part-of-speech discrimination, we confirmed that the KL divergence and the squared norm of embedding work as a measure of the informativeness of a word provided that the bias caused by word frequency is adequately corrected.