Applying the maximum entropy principle to multi-species neural networks improves species distribution models

The rapid expansion of citizen science initiatives has led to a significant growth of biodiversity databases, and particularly presence-only (PO) observations. PO data are invaluable for understanding species distributions and their dynamics, but their use in Species Distribution Models (SDM) is curtailed by sampling biases and the lack of information on absences. Poisson point processes are widely used for SDMs, with Maxent being one of the most popular methods. Maxent maximises the entropy of a probability distribution across sites as a function of predefined transformations of environmental variables, called features. In contrast, neural networks and deep learning have emerged as a promising technique for automatic feature extraction from complex input variables. In this paper, we propose DeepMaxent, which harnesses neural networks to automatically learn shared features among species, using the maximum entropy principle. To do so, it employs a normalised Poisson loss where for each species, presence probabilities across sites are modelled by a neural network. We evaluate DeepMaxent on a benchmark dataset known for its spatial sampling biases, using PO data for calibration and presence-absence (PA) data for validation across six regions with different biological groups and environmental covariates. Our results indicate that DeepMaxent improves model performance over Maxent and other state-of-the-art SDMs across regions and taxonomic groups. The method performs particularly well in regions of uneven sampling, demonstrating substantial potential to improve species distribution modelling. The method opens the possibility to learn more robust environmental features predicting jointly many species and scales to arbitrary large numbers of sites without an increased memory demand.

A novel approach to combine spatial and spectral information from hyperspectral images

This article proposes a generic framework to process jointly the spatial and spectral information of hyperspectral images. First, sub-images are extracted. Then each of these sub-images follows two parallel workflows, one dedicated to the extraction of spatial features and the other dedicated to the extraction of spectral features. Finally, the extracted features are merged, producing as many scores as sub-images. Two applications are proposed, illustrating different spatial and spectral processing methods. The first one is related to the characterization of a teak wood disk, in an unsupervised way. It implements tensors of structure for the spatial branch, simple averaging for the spectral branch and multi-block principal component analysis for the fusion process. The second application is related to the early detection of apple scab on leaves. It implements co-occurrence matrices for the spatial branch, singular value decomposition for the spectral branch and multiblock partial least squares discriminant analysis for the fusion process. Both applications demonstrate the interest of the proposed method for the extraction of relevant spatial and spectral information and show how promising this new approach is for hyperspectral imaging processing.