Interpretable Cross-Network Attention for Resting-State fMRI Representation Learning

Understanding how large-scale functional brain networks reorganize during cognitive decline remains a central challenge in neuroimaging. While recent self-supervised models have shown promise for learning representations from resting-state fMRI, their internal mechanisms are difficult to interpret, limiting mechanistic insight. We propose BrainInterNet, a network-aware self-supervised framework based on masked reconstruction with cross-attention that explicitly models inter-network dependencies in rs-fMRI. By selectively masking predefined functional networks and reconstructing them from remaining context, our approach enables direct quantification of network predictability and interpretable analysis of cross-network interactions. We train BrainInterNet on multi-cohort fMRI data (from the ABCD, HCP Development, HCP Young Adults, and HCP Aging datasets) and evaluate on the Alzheimer's Disease Neuroimaging Initiative (ADNI) dataset, in total comprising 5,582 recordings. Our method reveals systematic alterations in the brain's network interactions under AD, including in the default mode, limbic, and attention networks. In parallel, the learned representations support accurate Alzheimer's-spectrum classification and yield a compact summary marker that tracks disease severity longitudinally. Together, these results demonstrate that network-guided masked modeling with cross-attention provides an interpretable and effective framework for characterizing functional reorganization in neurodegeneration.

Curriculum-Guided Layer Scaling for Language Model Pretraining

As the cost of pretraining large language models grows, there is continued interest in strategies to improve learning efficiency during this core training stage. Motivated by cognitive development, where humans gradually build knowledge as their brains mature, we propose Curriculum-Guided Layer Scaling (CGLS), a framework for compute-efficient pretraining that synchronizes increasing data difficulty with model growth through progressive layer stacking (i.e. gradually adding layers during training). At the 100M parameter scale, using a curriculum transitioning from synthetic short stories to general web data, CGLS outperforms baseline methods on the question-answering benchmarks PIQA and ARC. Pretraining at the 1.2B scale, we stratify the DataComp-LM corpus with a DistilBERT-based classifier and progress from general text to highly technical or specialized content. Our results show that progressively increasing model depth alongside sample difficulty leads to better generalization and zero-shot performance on various downstream benchmarks. Altogether, our findings demonstrate that CGLS unlocks the potential of progressive stacking, offering a simple yet effective strategy for improving generalization on knowledge-intensive and reasoning tasks.

New Evaluation Metrics Capture Quality Degradation due to LLM Watermarking

With the increasing use of large-language models (LLMs) like ChatGPT, watermarking has emerged as a promising approach for tracing machine-generated content. However, research on LLM watermarking often relies on simple perplexity or diversity-based measures to assess the quality of watermarked text, which can mask important limitations in watermarking. Here we introduce two new easy-to-use methods for evaluating watermarking algorithms for LLMs: 1) evaluation by LLM-judger with specific guidelines; and 2) binary classification on text embeddings to distinguish between watermarked and unwatermarked text. We apply these methods to characterize the effectiveness of current watermarking techniques. Our experiments, conducted across various datasets, reveal that current watermarking methods are detectable by even simple classifiers, challenging the notion of watermarking subtlety. We also found, through the LLM judger, that watermarking impacts text quality, especially in degrading the coherence and depth of the response. Our findings underscore the trade-off between watermark robustness and text quality and highlight the importance of having more informative metrics to assess watermarking quality.

SkullGAN: Synthetic Skull CT Generation with Generative Adversarial Networks

Deep learning offers potential for various healthcare applications involving the human skull but requires extensive datasets of curated medical images. To overcome this challenge, we propose SkullGAN, a generative adversarial network (GAN), to create large datasets of synthetic skull CT slices, reducing reliance on real images and accelerating the integration of machine learning into healthcare. In our method, CT slices of 38 subjects were fed to SkullGAN, a neural network comprising over 200 million parameters. The synthetic skull images generated were evaluated based on three quantitative radiological features: skull density ratio (SDR), mean thickness, and mean intensity. They were further analyzed using t-distributed stochastic neighbor embedding (t-SNE) and by applying the SkullGAN discriminator as a classifier. The results showed that SkullGAN-generated images demonstrated similar key quantitative radiological features to real skulls. Further definitive analysis was undertaken by applying the discriminator of SkullGAN, where the SkullGAN discriminator classified 56.5% of a test set of real skull images and 55.9% of the SkullGAN-generated images as reals (the theoretical optimum being 50%), demonstrating that the SkullGAN-generated skull set is indistinguishable from the real skull set - within the limits of our nonlinear classifier. Therefore, SkullGAN makes it possible to generate large numbers of synthetic skull CT segments, necessary for training neural networks for medical applications involving the human skull. This mitigates challenges associated with preparing large, high-quality training datasets, such as access, capital, time, and the need for domain expertise.