Inverse Estimation of Elastic Modulus Using Physics-Informed Generative Adversarial Networks

While standard generative adversarial networks (GANs) rely solely on training data to learn unknown probability distributions, physics-informed GANs (PI-GANs) encode physical laws in the form of stochastic partial differential equations (PDEs) using auto differentiation. By relating observed data to unobserved quantities of interest through PDEs, PI-GANs allow for the estimation of underlying probability distributions without their direct measurement (i.e. inverse problems). The scalable nature of GANs allows high-dimensional, spatially-dependent probability distributions (i.e., random fields) to be inferred, while incorporating prior information through PDEs allows the training datasets to be relatively small. In this work, PI-GANs are demonstrated for the application of elastic modulus estimation in mechanical testing. Given measured deformation data, the underlying probability distribution of spatially-varying elastic modulus (stiffness) is learned. Two feed-forward deep neural network generators are used to model the deformation and material stiffness across a two dimensional domain. Wasserstein GANs with gradient penalty are employed for enhanced stability. In the absence of explicit training data, it is demonstrated that the PI-GAN learns to generate realistic, physically-admissible realizations of material stiffness by incorporating the PDE that relates it to the measured deformation. It is shown that the statistics (mean, standard deviation, point-wise distributions, correlation length) of these generated stiffness samples have good agreement with the true distribution.

Capsule Networks for Protein Structure Classification and Prediction

Capsule Networks have great potential to tackle problems in structural biology because of their attention to hierarchical relationships. This paper describes the implementation and application of a Capsule Network architecture to the classification of RAS protein family structures on GPU-based computational resources. The proposed Capsule Network trained on 2D and 3D structural encodings can successfully classify HRAS and KRAS structures. The Capsule Network can also classify a protein-based dataset derived from a PSI-BLAST search on sequences of KRAS and HRAS mutations. Our results show an accuracy improvement compared to traditional convolutional networks, while improving interpretability through visualization of activation vectors.