VisTA-SR: Improving the Accuracy and Resolution of Low-Cost Thermal Imaging Cameras for Agriculture

Thermal cameras are an important tool for agricultural research because they allow for non-invasive measurement of plant temperature, which relates to important photochemical, hydraulic, and agronomic traits. Utilizing low-cost thermal cameras can lower the barrier to introducing thermal imaging in agricultural research and production. This paper presents an approach to improve the temperature accuracy and image quality of low-cost thermal imaging cameras for agricultural applications. Leveraging advancements in computer vision techniques, particularly deep learning networks, we propose a method, called $\textbf{VisTA-SR}$ ($\textbf{Vis}$ual \& $\textbf{T}$hermal $\textbf{A}$lignment and $\textbf{S}$uper-$\textbf{R}$esolution Enhancement) that combines RGB and thermal images to enhance the capabilities of low-resolution thermal cameras. The research includes calibration and validation of temperature measurements, acquisition of paired image datasets, and the development of a deep learning network tailored for agricultural thermal imaging. Our study addresses the challenges of image enhancement in the agricultural domain and explores the potential of low-cost thermal cameras to replace high-resolution industrial cameras. Experimental results demonstrate the effectiveness of our approach in enhancing temperature accuracy and image sharpness, paving the way for more accessible and efficient thermal imaging solutions in agriculture.

End-to-end deep learning for directly estimating grape yield from ground-based imagery

Yield estimation is a powerful tool in vineyard management, as it allows growers to fine-tune practices to optimize yield and quality. However, yield estimation is currently performed using manual sampling, which is time-consuming and imprecise. This study demonstrates the application of proximal imaging combined with deep learning for yield estimation in vineyards. Continuous data collection using a vehicle-mounted sensing kit combined with collection of ground truth yield data at harvest using a commercial yield monitor allowed for the generation of a large dataset of 23,581 yield points and 107,933 images. Moreover, this study was conducted in a mechanically managed commercial vineyard, representing a challenging environment for image analysis but a common set of conditions in the California Central Valley. Three model architectures were tested: object detection, CNN regression, and transformer models. The object detection model was trained on hand-labeled images to localize grape bunches, and either bunch count or pixel area was summed to correlate with grape yield. Conversely, regression models were trained end-to-end to predict grape yield from image data without the need for hand labeling. Results demonstrated that both a transformer as well as the object detection model with pixel area processing performed comparably, with a mean absolute percent error of 18% and 18.5%, respectively on a representative holdout dataset. Saliency mapping was used to demonstrate the attention of the CNN model was localized near the predicted location of grape bunches, as well as on the top of the grapevine canopy. Overall, the study showed the applicability of proximal imaging and deep learning for prediction of grapevine yield on a large scale. Additionally, the end-to-end modeling approach was able to perform comparably to the object detection approach while eliminating the need for hand-labeling.

A workflow for segmenting soil and plant X-ray CT images with deep learning in Googles Colaboratory

X-ray micro-computed tomography (X-ray microCT) has enabled the characterization of the properties and processes that take place in plants and soils at the micron scale. Despite the widespread use of this advanced technique, major limitations in both hardware and software limit the speed and accuracy of image processing and data analysis. Recent advances in machine learning, specifically the application of convolutional neural networks to image analysis, have enabled rapid and accurate segmentation of image data. Yet, challenges remain in applying convolutional neural networks to the analysis of environmentally and agriculturally relevant images. Specifically, there is a disconnect between the computer scientists and engineers, who build these AI/ML tools, and the potential end users in agricultural research, who may be unsure of how to apply these tools in their work. Additionally, the computing resources required for training and applying deep learning models are unique, more common to computer gaming systems or graphics design work, than to traditional computational systems. To navigate these challenges, we developed a modular workflow for applying convolutional neural networks to X-ray microCT images, using low-cost resources in Googles Colaboratory web application. Here we present the results of the workflow, illustrating how parameters can be optimized to achieve best results using example scans from walnut leaves, almond flower buds, and a soil aggregate. We expect that this framework will accelerate the adoption and use of emerging deep learning techniques within the plant and soil sciences.