Extracting Fine-Grained Knowledge Graphs of Scientific Claims: Dataset and Transformer-Based Results

Recent transformer-based approaches demonstrate promising results on relational scientific information extraction. Existing datasets focus on high-level description of how research is carried out. Instead we focus on the subtleties of how experimental associations are presented by building SciClaim, a dataset of scientific claims drawn from Social and Behavior Science (SBS), PubMed, and CORD-19 papers. Our novel graph annotation schema incorporates not only coarse-grained entity spans as nodes and relations as edges between them, but also fine-grained attributes that modify entities and their relations, for a total of 12,738 labels in the corpus. By including more label types and more than twice the label density of previous datasets, SciClaim captures causal, comparative, predictive, statistical, and proportional associations over experimental variables along with their qualifications, subtypes, and evidence. We extend work in transformer-based joint entity and relation extraction to effectively infer our schema, showing the promise of fine-grained knowledge graphs in scientific claims and beyond.

Extracting Qualitative Causal Structure with Transformer-Based NLP

Qualitative causal relationships compactly express the direction, dependency, temporal constraints, and monotonicity constraints of discrete or continuous interactions in the world. In everyday or academic language, we may express interactions between quantities (e.g., sleep decreases stress), between discrete events or entities (e.g., a protein inhibits another protein's transcription), or between intentional or functional factors (e.g., hospital patients pray to relieve their pain). This paper presents a transformer-based NLP architecture that jointly identifies and extracts (1) variables or factors described in language, (2) qualitative causal relationships over these variables, and (3) qualifiers and magnitudes that constrain these causal relationships. We demonstrate this approach and include promising results from in two use cases, processing textual inputs from academic publications, news articles, and social media.