Semantic Image Segmentation with Deep Learning for Vine Leaf Phenotyping

Plant phenotyping refers to a quantitative description of the plants properties, however in image-based phenotyping analysis, our focus is primarily on the plants anatomical, ontogenetical and physiological properties.This technique reinforced by the success of Deep Learning in the field of image based analysis is applicable to a wide range of research areas making high-throughput screens of plants possible, reducing the time and effort needed for phenotypic characterization.In this study, we use Deep Learning methods (supervised and unsupervised learning based approaches) to semantically segment grapevine leaves images in order to develop an automated object detection (through segmentation) system for leaf phenotyping which will yield information regarding their structure and function.In these directions we studied several deep learning approaches with promising results as well as we reported some future challenging tasks in the area of precision agriculture.Our work contributes to plant lifecycle monitoring through which dynamic traits such as growth and development can be captured and quantified, targeted intervention and selective application of agrochemicals and grapevine variety identification which are key prerequisites in sustainable agriculture.

Pulmonary embolism identification in computerized tomography pulmonary angiography scans with deep learning technologies in COVID-19 patients

The main objective of this work is to utilize state-of-the-art deep learning approaches for the identification of pulmonary embolism in CTPA-Scans for COVID-19 patients, provide an initial assessment of their performance and, ultimately, provide a fast-track prototype solution (system). We adopted and assessed some of the most popular convolutional neural network architectures through transfer learning approaches, to strive to combine good model accuracy with fast training. Additionally, we exploited one of the most popular one-stage object detection models for the localization (through object detection) of the pulmonary embolism regions-of-interests. The models of both approaches are trained on an original CTPA-Scan dataset, where we annotated of 673 CTPA-Scan images with 1,465 bounding boxes in total, highlighting pulmonary embolism regions-of-interests. We provide a brief assessment of some state-of-the-art image classification models by achieving validation accuracies of 91% in pulmonary embolism classification. Additionally, we achieved a precision of about 68% on average in the object detection model for the pulmonary embolism localization under 50% IoU threshold. For both approaches, we provide the entire training pipelines for future studies (step by step processes through source code). In this study, we present some of the most accurate and fast deep learning models for pulmonary embolism identification in CTPA-Scans images, through classification and localization (object detection) approaches for patients infected by COVID-19. We provide a fast-track solution (system) for the research community of the area, which combines both classification and object detection models for improving the precision of identifying pulmonary embolisms.