Classic Graph Structural Features Outperform Factorization-Based Graph Embedding Methods on Community Labeling

Graph representation learning (also called graph embeddings) is a popular technique for incorporating network structure into machine learning models. Unsupervised graph embedding methods aim to capture graph structure by learning a low-dimensional vector representation (the embedding) for each node. Despite the widespread use of these embeddings for a variety of downstream transductive machine learning tasks, there is little principled analysis of the effectiveness of this approach for common tasks. In this work, we provide an empirical and theoretical analysis for the performance of a class of embeddings on the common task of pairwise community labeling. This is a binary variant of the classic community detection problem, which seeks to build a classifier to determine whether a pair of vertices participate in a community. In line with our goal of foundational understanding, we focus on a popular class of unsupervised embedding techniques that learn low rank factorizations of a vertex proximity matrix (this class includes methods like GraRep, DeepWalk, node2vec, NetMF). We perform detailed empirical analysis for community labeling over a variety of real and synthetic graphs with ground truth. In all cases we studied, the models trained from embedding features perform poorly on community labeling. In constrast, a simple logistic model with classic graph structural features handily outperforms the embedding models. For a more principled understanding, we provide a theoretical analysis for the (in)effectiveness of these embeddings in capturing the community structure. We formally prove that popular low-dimensional factorization methods either cannot produce community structure, or can only produce ``unstable" communities. These communities are inherently unstable under small perturbations.

The impossibility of low rank representations for triangle-rich complex networks

The study of complex networks is a significant development in modern science, and has enriched the social sciences, biology, physics, and computer science. Models and algorithms for such networks are pervasive in our society, and impact human behavior via social networks, search engines, and recommender systems to name a few. A widely used algorithmic technique for modeling such complex networks is to construct a low-dimensional Euclidean embedding of the vertices of the network, where proximity of vertices is interpreted as the likelihood of an edge. Contrary to the common view, we argue that such graph embeddings do not}capture salient properties of complex networks. The two properties we focus on are low degree and large clustering coefficients, which have been widely established to be empirically true for real-world networks. We mathematically prove that any embedding (that uses dot products to measure similarity) that can successfully create these two properties must have rank nearly linear in the number of vertices. Among other implications, this establishes that popular embedding techniques such as Singular Value Decomposition and node2vec fail to capture significant structural aspects of real-world complex networks. Furthermore, we empirically study a number of different embedding techniques based on dot product, and show that they all fail to capture the triangle structure.