Selecting Interpretability Techniques for Healthcare Machine Learning models

In healthcare there is a pursuit for employing interpretable algorithms to assist healthcare professionals in several decision scenarios. Following the Predictive, Descriptive and Relevant (PDR) framework, the definition of interpretable machine learning as a machine-learning model that explicitly and in a simple frame determines relationships either contained in data or learned by the model that are relevant for its functioning and the categorization of models by post-hoc, acquiring interpretability after training, or model-based, being intrinsically embedded in the algorithm design. We overview a selection of eight algorithms, both post-hoc and model-based, that can be used for such purposes.

Active learning of Boltzmann samplers and potential energies with quantum mechanical accuracy

Extracting consistent statistics between relevant free-energy minima of a molecular system is essential for physics, chemistry and biology. Molecular dynamics (MD) simulations can aid in this task but are computationally expensive, especially for systems that require quantum accuracy. To overcome this challenge, we develop an approach combining enhanced sampling with deep generative models and active learning of a machine learning potential (MLP). We introduce an adaptive Markov chain Monte Carlo framework that enables the training of one Normalizing Flow (NF) and one MLP per state. We simulate several Markov chains in parallel until they reach convergence, sampling the Boltzmann distribution with an efficient use of energy evaluations. At each iteration, we compute the energy of a subset of the NF-generated configurations using Density Functional Theory (DFT), we predict the remaining configuration's energy with the MLP and actively train the MLP using the DFT-computed energies. Leveraging the trained NF and MLP models, we can compute thermodynamic observables such as free-energy differences or optical spectra. We apply this method to study the isomerization of an ultrasmall silver nanocluster, belonging to a set of systems with diverse applications in the fields of medicine and catalysis.