We study the fairness of dimensionality reduction methods for recommendations. We focus on the established method of principal component analysis (PCA), which identifies latent components and produces a low-rank approximation via the leading components while discarding the trailing components. Prior works have defined notions of "fair PCA"; however, these definitions do not answer the following question: what makes PCA unfair? We identify two underlying mechanisms of PCA that induce unfairness at the item level. The first negatively impacts less popular items, due to the fact that less popular items rely on trailing latent components to recover their values. The second negatively impacts the highly popular items, since the leading PCA components specialize in individual popular items instead of capturing similarities between items. To address these issues, we develop a polynomial-time algorithm, Item-Weighted PCA, a modification of PCA that uses item-specific weights in the objective. On a stylized class of matrices, we prove that Item-Weighted PCA using a specific set of weights minimizes a popularity-normalized error metric. Our evaluations on real-world datasets show that Item-Weighted PCA not only improves overall recommendation quality by up to $0.1$ item-level AUC-ROC but also improves on both popular and less popular items.