Research on pronunciation assessment systems focuses on utilizing phonetic and phonological aspects of non-native (L2) speech, often neglecting the rich layer of information hidden within the non-verbal cues. In this study, we proposed a novel pronunciation assessment framework, IntraVerbalPA. % The framework innovatively incorporates both fine-grained frame- and abstract utterance-level non-verbal cues, alongside the conventional speech and phoneme representations. Additionally, we introduce ''Goodness of phonemic-duration'' metric to effectively model duration distribution within the framework. Our results validate the effectiveness of the proposed IntraVerbalPA framework and its individual components, yielding performance that either matches or outperforms existing research works.